Zonotrichia leucophrys gambelii (white-crowned sparrow): 135454006
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Entry
135454006 CDS
T09958
Symbol
PMS2
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03430
Mismatch repair
zle03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
135454006 (PMS2)
03460 Fanconi anemia pathway
135454006 (PMS2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zle03400
]
135454006 (PMS2)
DNA repair and recombination proteins [BR:
zle03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
135454006 (PMS2)
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
DUF5741
Motif
Other DBs
NCBI-GeneID:
135454006
NCBI-ProteinID:
XP_064581734
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All DBs
Position
14:9503996..9515181
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AA seq
871 aa
AA seq
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MEAAEPCPQPAGAIRPIDRRSVHRICSGQVVLNLGTAVKELLENSLDAGATNIDIKLKDH
GAELIEVSDNGVGVEEENFEGLTLKHYTSKIQDFSDLIHVETFGFRGEALSSLCALSDVT
IFTCHKSAKVGTRLVFDHNGRITQRAPFPRQQGTTVSIQQLFYTLPVRHKEFQRNIKKEY
AKMVQLLQAYCIISKGVRINCTNQIGQGKKSCVISTAGSPSLKENIGAVFGQKQLQSLIP
FVQLPPSEAVCEEYGLNPAAMPQNLYSIGGFISRCDHGVGRSTTDRQFFFINQRPCDPAK
VVKIVNEVYHLHNKHQYPFVVLNIGVDSECVDINVTPDKRQILLQEEKFLLAILKTSLLE
MFGSDVNKLNVNQKLLDIAGNLKKTLPEEAERPQADILSDSETESPSGEGKRIMTLARLR
ESFSLHQATESNFQSSKKVKQQHSSPRQRLLDLTGGTVKIQKALLTKKAESCQKLDSEVS
VPRRHLGKLEDASDSGFCSISESDAGCSTPEAGSCINSESAVNSEEEFCSTEEQMQKECL
TTAGCSKKSLDCDVQVLGTEPELDQVNDWTDQNKLSQEANGCSPRVKRFKSRNFKSETDD
SKAGKYPEVKNTSVDVLVEVKKKIVPLEFSMKVLAEKVKKVIQQQQKNTETENYRRFKAK
ISPGDNKVAEDELRKEISKEMFAKMEIIGQFNLGFIIAKLNSDLFIIDQHATDEKYNFEM
LQQHTVLQGQKLIVPQNLNLTAVNETVLIENLEIFRKNGFDFVINENAPVTQRVKLVSLP
TSKNWTFGPQDIDELIFMLSDCPGVMCRPSRVRQMFASRACRKSVMIGTALNVQEMRKLI
THMGEIEHPWNCPHGRPTMRHIVSLDLISPQ
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggctgagccctgcccgcagcccgccggggccatccggcccatcgaccgccgg
tctgtgcatcgcatctgctcggggcaggtcgtgctgaacctcggcactgccgtgaaagag
ctgctggagaacagcctggatgccggagctaccaacatcgatataaaacttaaagatcat
ggggcagaactgatagaagtttcagataatggagttggagtggaagaggaaaactttgaa
ggcttgactctgaaacattacacatcaaagatacaagatttttctgatctaatacatgtt
gaaacatttgggtttcgaggtgaagctttgagttcactgtgtgcattaagtgacgtcacc
attttcacctgtcacaagtcagccaaggttgggacccgtttggtgtttgatcacaatggc
agaatcacccagagggctcctttccctcggcagcagggcaccactgtcagcatccagcag
ttgttttacaccttgccagtgcggcacaaagagttccagagaaacatcaaaaaggaatat
gcaaaaatggtgcagctgttgcaagcctactgcattatttccaaaggagtgaggattaac
tgcactaatcaaattggccaggggaaaaaaagctgtgtgatatccactgctggaagtccc
agtttaaaggagaacattggagcagtatttggacaaaaacagttgcagagccttattcct
ttcgttcagcttcctcctagtgaagctgtttgtgaagaatatggactcaaccctgctgcc
atgccacaaaatctctatagcattggcggcttcatttcccgctgtgatcacggtgtggga
aggagcacgacagacagacagttcttcttcatcaaccaacggccctgtgatccagccaag
gtggtcaagattgtgaatgaagtttatcacttacacaataaacaccagtatccatttgtt
gtccttaacattggggtagattctgagtgtgttgacatcaatgtaactcctgacaaaagg
cagattttacttcaggaggaaaagtttttattagcaattctaaagacttctctgctggag
atgtttggtagtgatgttaacaaactgaatgtcaatcagaaacttctggacattgcaggt
aacttgaagaagacacttcctgaagaggcagaaaggcctcaggcagacattctgtctgac
tctgagaccgagagtccaagtggtgaaggcaaaagaataatgactcttgccagattaagg
gagtcattctctctccatcaagcaacagaaagtaatttccaaagctctaaaaaggtaaaa
cagcagcacagttcccctagacaaaggttacttgatctcactggggggactgtaaagatt
caaaaggctctcttgactaagaaggctgaaagttgtcagaagttggactcagaggtgtca
gttccaaggagacacttgggaaaattagaagatgcttcagattctggattctgcagtatt
tctgagtcagatgctggatgtagtacaccagaagctggaagctgcatcaatagtgaaagt
gcagttaattctgaggaagaattctgtagcacagaagaacagatgcagaaggaatgtctt
acaactgctgggtgcagtaagaaatcactggactgtgatgttcaggtcttgggcactgaa
cctgagctggatcaagtgaatgactggactgatcaaaacaagctttctcaagaagcaaat
ggttgttccccaagagtaaaacgttttaaaagcagaaactttaaaagtgaaacagatgat
tccaaggcaggtaaatatcctgaagtgaagaacactagtgttgatgtactggtggaagtt
aaaaagaaaattgtgcctcttgaattctctatgaaggtcttggcagaaaaagtaaaaaag
gtaatacagcaacaacagaaaaatacagaaactgaaaattacagaagatttaaagcaaaa
attagtcctggggacaataaagtagcagaagatgaattaagaaaagagatcagtaaagaa
atgtttgcaaaaatggaaatcattggccagttcaatttagggtttattatagcaaagctg
aattctgatcttttcataattgaccagcatgctactgatgagaaatacaactttgagatg
ttgcaacagcacactgttctccaaggtcagaagctgatagtgcctcaaaatctcaattta
acagcagtaaatgaaactgtattgattgaaaacctggaaatattcagaaaaaatggcttt
gattttgtcataaatgaaaatgctcctgtaactcaaagagttaaattggtatcattgcca
accagcaaaaactggacttttgggccacaagacatagatgagctgattttcatgttgagt
gactgccctggagtgatgtgcaggccctccagggtcaggcagatgtttgcttctcgagct
tgcaggaagtctgtgatgattggaactgcactgaatgtgcaggaaatgagaaaactgatc
acccacatgggtgagattgagcatccctggaactgcccccatggaaggcctaccatgaga
cacatagtcagtttggacttgatttcaccacaataa
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