Zonotrichia leucophrys gambelii (white-crowned sparrow): 135454083
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Entry
135454083 CDS
T09958
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
135454083 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
zle01001
]
135454083 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
zle04054
]
135454083 (CIITA)
Enzymes [BR:
zle01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
135454083 (CIITA)
Protein kinases [BR:
zle01001
]
Serine/threonine kinases: Other
TAF1 family
135454083 (CIITA)
Pattern recognition receptors [BR:
zle04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
135454083 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_9
LRR_8
NB-ARC
LRR_14
nSTAND_NTPase5
RsgA_GTPase
NPHP3_N
AAA_19
Motif
Other DBs
NCBI-GeneID:
135454083
NCBI-ProteinID:
XP_064581900
LinkDB
All DBs
Position
14:6262734..6286487
Genome browser
AA seq
1121 aa
AA seq
DB search
MDSVFVPENGYLDLLHSDIDPVHLCTFFDPKSSGDEEGDFSTDLEVDASNYEQFNNMDFP
YENGDGFYPCCNTTDAYAKMAELVEYVLKDQQEKQVEDIFAGNLILDDIAAENTEKFPDI
KMQSCLKRTFLGSAAESYYDASEPKYKKIVEVPAASAGSGSFFAMPLNSCTSLTNQHMSC
SVPAAHGLERSLIIPGLSEPLTSECLPASVKGYQENPGLVGAPQQIFNFVLENGTSEVIV
YPVLTSSMETFMSPVFPVNLCAQHTYTTSPGIPDAAVADECLEKFQEVQDSITPSEEPFK
RPEQVETFCSSLKDYFRDTCKSVTMEREVNLDHLFIDGTLVQSQTETKTGKNSAKAMEKE
LVTCSLQEKEKTAIDRSQIFQIPQRKDLETKVIVVLGKAGMGKSILVQKICQDWSNGEFS
QFEFVFWFDCKISLPEKQYSLKELLLEFFVKPQEGSKEIFEYMLQNPDKVLLIFDGFKGL
HDHENFPRCSASQPEKDLCSIKELLSGLIQKKILNGCTLLFTARPKDKLYQFMSKVDKTI
EIVGFSPQQRELYITKYFEESLYCDSALKLIKECEYLFSHCYSPVMCRFVCFLCETVLEM
GEKSLPSTLTEVFLKFFQQKIMFMQTDVTNVTTTKNQENLVTLARVAWCLGEKHQSAMKS
DLIPSKEVKEFALKYGFFLPFAFPRHSDSEEEEFGCTFSDFVIQNFLCALHLLLAEELKD
KNLTKYLSFLSKKKKPYNWLDLMPRFVAGLMFLQDDPCFCSLSNEDEKQSTKKQKTLLKY
IRRLQIDTLCPERLLELLCCVYETQNNYLLQHVALRLEPKLSFLGIALTPPDVHVLHSVL
KRSRKEFSLDLQNSSIDMPGLQALVSLRNVTSFRASLSDTVRLWKSLEQTKDYELLKAST
EKFVLDPFKAKTMKDISDLSDLVEMQEKMMNCVQEASGCTSYEIPAIRNLRKLEFALGPA
CGLQGLLKLVKILAAFPSLQHLDLDALSENGIGDEGAKSLSEVFPTLTSLETLNLSQNKI
TDLGAENLAAALPSLSSLKTLSLYNNNICDFGAENLAKVLPAMTSLRVLDVQYNKITGVG
AQQLTDSLRKCPQMKNLVMWNPTIPYGVLEHLHQLDSRISV
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atggattcagtatttgtgcctgaaaatggctaccttgatttactgcacagtgatattgac
ccagtgcatctgtgtactttctttgatccaaagtcatctggagatgaagaaggtgacttc
tctacagatcttgaagttgatgccagcaactatgaacagttcaataatatggatttccca
tatgaaaatggagatgggttctacccctgttgcaacaccacggatgcttatgctaaaatg
gctgaattagtagaatatgtgctcaaggatcagcaggagaagcaggttgaagacattttt
gcagggaaccttattttggatgacattgctgccgaaaacactgagaaatttcctgacata
aagatgcagtcatgtcttaaacgaactttcttaggctctgcagcagagagttactatgat
gcttcagaacccaaatataagaaaattgtggaagtccctgcagcctctgcagggagtggc
agtttctttgctatgcctctcaacagctgcacctccctaaccaaccagcacatgtcctgt
tctgttcctgctgcccacgggctggaaaggagcctcatcattcctggattgtcagaacct
ttgacctcagagtgcctaccagccagtgtaaaagggtaccaagagaatccaggcttggta
ggtgctcctcagcagatatttaattttgttcttgaaaatggcacatctgaagttatagta
tatccagtgctgacatcttccatggaaacattcatgtctccagtttttccagttaattta
tgtgcacaacatacgtataccaccagccctggaattcctgatgcagcagtagcagatgaa
tgtttagagaaatttcaagaagttcaagattccataactccttctgaagaacctttcaaa
agaccagagcaagtggaaactttctgttcatcccttaaggattatttccgagacacgtgc
aaatctgtgaccatggagcgggaagtaaatctggatcacctgttcattgatgggacactt
gttcaaagtcaaactgaaaccaagactggaaagaacagtgcaaaagcaatggaaaaggag
ctggtaacctgcagcctgcaagagaaggaaaagacagccattgacagaagccaaatattt
caaatcccacagcgtaaagacttagagactaaagtgattgtggtgctggggaaagcagga
atgggcaaaagcattctcgttcagaagatctgccaggactggtccaacggagagttttct
cagtttgaatttgtattttggtttgactgcaaaataagcttgcctgagaagcaatacagc
ctgaaggaactgctgcttgaattttttgtaaagcctcaagagggaagcaaagagatcttt
gagtatatgttgcaaaatcctgataaagtccttctgatttttgacggttttaaagggttg
cacgatcacgagaattttcctcgttgctcagccagccagcctgaaaaggatttgtgcagc
ataaaggagctgctttcaggactcatccagaaaaagatactcaatggctgtactttatta
tttacagcaaggccaaaagacaaactgtaccagttcatgtccaaagtggataagactatt
gaaattgtaggattttcccctcagcagagagaattgtacataaccaaatactttgaagaa
tcactctactgtgatagtgcactgaaattaatcaaagagtgtgagtacttgttcagtcat
tgttacagccctgttatgtgtagatttgtttgttttctctgtgagacagtgcttgaaatg
ggagagaaaagtcttccttcaactcttactgaagtcttcctgaaattttttcagcagaag
ataatgtttatgcaaacagatgttacaaatgttacaaccacaaaaaatcaagagaatctt
gttaccctagctcgtgtagcctggtgtcttggagaaaagcaccaaagtgccatgaaaagt
gatcttattccttctaaggaagttaaagagtttgctctgaagtatgggttcttcctgcca
tttgcattccccagacattcagatagtgaagaagaggaatttgggtgcacattctctgat
tttgtcattcagaatttcttgtgtgcgcttcaccttttgttagcagaagagctcaaggat
aaaaatctaacaaagtacctgtcttttctgtccaagaagaaaaaaccttataactggtta
gatttaatgcctcggtttgtggctggtttgatgtttctccaggatgatccctgcttctgc
tctctttcaaatgaggatgaaaaacaatcaaccaagaagcagaagaccctcttgaaatac
attagaaggttgcagattgatactctctgtccagagaggttgctggagcttttatgttgt
gtttatgaaacacagaacaattatctcctgcagcatgtggccttaaggctggagccaaag
ttgtcttttctgggcatagctcttacaccacctgatgtccatgtactgcattctgttttg
aaaaggtcaagaaaagagttttccttggatttgcagaacagcagcattgacatgccaggg
ctgcaggccttggtcagcctgaggaatgtgacatcgttcagggcttccctcagtgacaca
gtcaggctctggaaatctttagaacagacaaaagactacgaactgctgaaagcatccaca
gagaaatttgttcttgatccctttaaggcaaagacaatgaaggacatcagtgacctctcc
gaccttgtagagatgcaggagaagatgatgaattgtgtgcaagaagcatctggttgcacc
agctatgaaattcctgccatcagaaacctcagaaaactggaatttgcgctgggtccagca
tgtggccttcaaggattgctaaaacttgtgaaaattcttgcagcatttccatcacttcag
catttagaccttgatgctctgagtgaaaatggcataggagatgaaggagcaaagagtcta
tctgaagtctttccaaccctgacatcactggaaacattaaatttatcacagaataaaata
acagacctgggtgcagagaaccttgctgcagctctcccttccttgtcttccttaaaaaca
ctaagcttgtacaataacaacatttgcgattttggagcagaaaatctggcaaaggttctt
cctgcaatgacatctttaagagtgctagatgttcagtataacaaaataactggtgttgga
gcccagcagctgactgacagcctacgaaaatgtccccaaatgaagaacctggtgatgtgg
aatcccaccattccctatggagttcttgaacaccttcaccagctggactccaggatcagt
gtgtag
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