Zonotrichia leucophrys gambelii (white-crowned sparrow): 135454144
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Entry
135454144 CDS
T09958
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
135454144 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zle04121
]
135454144 (SLX4)
03400 DNA repair and recombination proteins [BR:
zle03400
]
135454144 (SLX4)
Ubiquitin system [BR:
zle04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
135454144 (SLX4)
DNA repair and recombination proteins [BR:
zle03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
135454144 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
B129_C2H2-zf
zf-met
zf-C2H2_4
zf-C2H2
zf-C2H2_6
Zn-C2H2_12
Motif
Other DBs
NCBI-GeneID:
135454144
NCBI-ProteinID:
XP_064582065
LinkDB
All DBs
Position
14:2623853..2653035
Genome browser
AA seq
1843 aa
AA seq
DB search
MDEQDNDFKELWANILSGAKKKAGDAEATKTVQNRPKSTTARSKLRRGKAAAKSQTLHHS
PAAKEKNFLQNLGPKEQTLVHEDGDAAACSGEAAQGDGARSPLPASQLSTGTSEGSQRSL
TVNPLSDSSQTTLPFLPATPPGSCSSPTPKVRVAELVVERMQQFKRVAPEQLKLSSDGSA
PKAAASWDFPARSQEQEPPEDDTQQLPSLEQDSALALALQQECKEGALASLEDAGLFFCQ
ICQKDLTAMNSLRREQHVNRCLDEMEEAQVSSCSKPVVPECPICGKQFQTPQSRVSHLKR
CAVEMEVPPNLLLQAVQLQVATLGDAALQCPSNQPSRAKRKGPSNEDLRKTQKRAKMEPK
DEDLQVAMAMSRSLLEQEKQEQAKSVTNVKAVAAFPIKWKPGSEKKRRRKGTSAPPPLLL
QDPEKVHKRIQERVAMMLTEEVEFPPTPQLPISRILEDDSGAAAWLMPLCKAKKCFLWNI
SALTGPCDPESFYTAALSPPIEPWKPVQNKPENLQPSVGSHQPQISQQTQPDLSSQETTC
TKVGGQTSDGSKPVPEGDGQLLSPSQDIQTLQDLVDLAREGLTLTQWNLDTGRVQAAEQP
GEELTSSDPPLSGFVPPSKKKSLLRSSTKSSLGLLAQDFGAMVNNPHLSDVQFQVDSGEV
LYAHLFVLYARCPAAAQAVNNEGVLVLVGDGRPMTGLAERLSASVAAFLRYLYAADTNFP
AGLRPQLQALAARFGVRELMAECESSTGESQVSSGGDSEDDLISVRDDEDCEDRAENFQD
LLKSVWVGEDEEEAAMLSPECQKEDDSEVGEQELEEIYEFAATQRKMAQGEREVSEGTDC
SMCSDTEAVQGTNQQTGQEEVKRPESASVSNSLEDLRDGNGEERSKCDLSVQEKMQNVNR
CKSMNDPQTSIVPHHSEPQKWDGTSHGANEGVAVEGCEDVKDSRSPQVSHDKADHCEEHF
PAFQGDTDINDSYEHLFSASQGYHCEPSPVKEVTKESGKSPSEKHVGLNDSFVFSKSQKD
FSPCKNGFCRSPTPQPCVSLFPALGSSPASPKSERKFAREHVSTPKQNKKEKSFPSDEIH
SQKAKELGAASKNEITVSPAELPHSESNKHTHVPVLSSPGRTQDAAAHRIKKGYVIVLSS
SDDDEMELEQGKKLPESDSALKEMEVPGHLKCTDMEQGPEIAKPAHNSSVPETEQRSAQV
SCGNTDTVCVTGDVKVCPEFPLSRQTGACTEIKQSPNLSPGKRLSNEMSPGTDSSWLVPG
TPVLSKSRSFSTQTLVTSINSLKGSGSKLSTRNFAAGYNDHEVAGNLIKVHETTLSDKHL
PVEDLANGRSPPSSPAAESSSKNPLPVSPAAPVLLSPGHTSREGKCANISGLPTLVPPCQ
EQPLEDKINVSVVELEDSDREVSLPSLGSSVLLCEEPPIPVDDCWHLGYVSPARGDSHSS
GQVSPAKSSTGSSPRPGSWQEQGESPVQVQGMQGSTPVQGGPAGRRRTLQCPEKSPIEPC
SSVGSRASYLDSKIWDDWNGEEKEDELPEILPLSQRLAAAAGAGQTDPVKTPEPSCQENN
RSPSTPVTPMPAYSIMETPQLKKELSRFGVRALPKRQMVLKLKEIFQYTHQDGDSDFEDE
ISYSQPLPQKSPRQPKAGRAGGRNRAGAPRAGGKRKQLAKGDGAHGTGCAPPKDRTKVTH
HPEGAKEQEGPSESLAADGEELPASQESARSSLDGSDISFGSQSSFVNGFETCAFTSEEE
EEEFPASQAAAREEEKLEAVRCYIRSNTALYNRILFYEPIELADLHTELKQNGIKISKAK
LLDFLDSQCITTTMARARKEQVQKRKESRKQRRRYRVKPSPTC
NT seq
5532 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacaggacaatgatttcaaagagttgtgggcaaatattttgagtggggcaaag
aaaaaggctggggatgctgaggcaacaaagacggttcagaacaggccaaagagcaccaca
gcacgaagcaaattgagaagaggcaaagctgctgctaagagccaaacccttcatcactca
ccagcagcgaaggagaaaaacttccttcagaatctgggcccaaaggagcaaacgttggtg
catgaggatggtgatgctgcagcctgtagtggtgaggctgcacagggagatggagcaagg
agccctctccctgccagccagctgagcacagggacctctgagggaagccagagatctctg
acagtaaatcctctgagtgactcttcccagaccaccttacccttccttcctgctactcct
ccaggatcctgctcctcacccacccccaaggtgagggtggcagagctggtggtggagaga
atgcagcagttcaagagggtggcacccgagcagctgaagctcagctcggatgggagcgcg
ccaaaggctgcagccagctgggatttccctgccaggagccaggagcaggagcctcctgag
gatgatacccagcagctcccatccctggaacaggacagtgccctggctttggctctccag
caggaatgcaaggagggagccctggcaagcctggaggatgcaggtttgttcttctgtcag
atctgccagaaggatctcacagccatgaacagcctgcggcgagagcagcacgtcaacagg
tgtctggatgagatggaagaagcccaggtgtcatcctgcagcaaaccagtggtccctgag
tgtcccatctgtgggaagcagttccaaaccccccagagcagagtcagccacctgaaacgc
tgtgctgtggagatggaggtgcctcctaacctgctgctccaggctgtgcagctgcaggtg
gccactcttggtgatgcagctcttcagtgtcccagcaatcagcccagcagggcaaagagg
aaaggcccctccaacgaggacctgaggaaaacacagaagagggccaaaatggagcctaag
gatgaagatctgcaggttgccatggcaatgtcacgctctctgttggagcaagaaaagcag
gagcaagcaaaatcagttacaaatgtgaaagcagtggctgctttcccaatcaaatggaag
ccaggatcagagaaaaagaggcgtaggaaaggcaccagtgcccctccacctctgctgctc
caggacccagagaaggtccacaagaggatccaggagagagtagccatgatgctgacagaa
gaggtggagttccctcccacccctcagctgcccatcagtaggattctggaggatgactct
ggagcagcagcctggctcatgccattgtgcaaagccaagaaatgctttttgtggaacatc
agtgctctgacaggcccctgtgaccctgaatcattctacactgcagccttgagccctcca
attgaaccctggaagcctgtgcagaataagccagagaaccttcagccatcagtgggatct
catcagccacaaatatcccagcaaactcagcctgacctcagttctcaggaaaccacttgc
acaaaggttggaggccaaacttctgatggatccaagccagttcctgaaggagatgggcag
cttttgtccccaagccaggacattcagaccctgcaggacctggtggacttggccagggaa
ggactcacccttacccagtggaaccttgacactggccgggttcaggcagcagagcagcca
ggagaagaactgacttccagtgatcccccacttagtggctttgtgcccccatccaagaag
aagagcctcctcaggagcagcactaaatcctctctggggctgctggctcaagattttggt
gccatggtcaacaacccccacctgagtgatgtgcagttccaggtggacagcggcgaggtt
ctctacgctcacctgttcgtgctgtacgcgcggtgcccggcggcggcccaggctgtgaat
aatgaaggagttcttgtgttggtgggagacgggcggccgatgacgggccttgctgagcga
ttgtcagccagcgtggccgccttcctgcgctacctctacgctgctgacaccaacttccct
gctgggctgcggccccagctgcaggccctggctgccaggtttggtgtgagggaactgatg
gcagagtgtgaaagcagcactggagagagccaggtgtcctctggaggggattcagaagat
gatcttatctctgtgagggatgatgaagattgtgaggacagagctgagaacttccaagac
ctcttgaagtcagtgtgggtgggtgaagatgaggaagaagcagctatgctgagccctgag
tgccagaaggaagatgacagtgaggtgggagagcaagagctggaggaaatctatgagttt
gctgcaactcagaggaagatggctcagggtgaaagagaggtgagcgagggaacagactgc
agcatgtgcagtgacactgaggcagtccagggtacaaaccagcaaactgggcaggaggag
gtaaagagacctgaatctgcctcagtaagcaacagcctcgaagatctgagggatggcaac
ggtgaggaaagatctaaatgtgacttgtctgtccaagaaaagatgcagaatgtaaatagg
tgcaagagcatgaatgatccacagacctctattgtgcctcaccacagtgaacctcagaaa
tgggatggaacctcccatggtgctaatgaaggagtggctgttgagggatgtgaggatgtg
aaggattccaggtcacctcaggtctcacatgacaaggcagatcactgtgaagagcacttt
cctgctttccagggtgacactgatataaatgacagctatgaacatttgttttctgcctct
caggggtatcactgtgaaccttccccagtgaaagaagttaccaaagaatcaggaaagtcc
cctagtgaaaaacatgttggtcttaatgattcatttgtgttcagcaagtcacaaaaagac
ttctctccatgtaagaatggattttgtagaagtccaactccccagccttgtgtgtccctt
tttcctgctcttggctcttcacctgcatctccaaaatcagagagaaagtttgccagggaa
catgtgtcaacaccaaagcaaaacaaaaaggaaaaatcattcccatctgatgaaatacac
tcccagaaagccaaggagctgggtgctgcatccaaaaatgagatcacagtttctccagca
gagcttcctcacagtgaatccaacaagcacacacatgtcccagtgttgtcatcaccaggc
aggactcaggatgctgcagctcacagaatcaagaagggttatgttattgttttatcttct
tctgatgatgatgaaatggagttagaacaaggcaagaagttgccagagtctgactctgct
ctgaaggaaatggaagtccctgggcacctgaagtgtacagacatggaacaaggtcctgag
atagcaaaacctgcccataactcatccgtccctgaaacagagcagagatcagcccaggtc
tcatgtggcaatacagacacagtgtgtgtaactggtgatgtaaaggtgtgccctgaattt
cctctcagcagacaaacaggtgcttgtacagagatcaaacagagtccaaacctgagccct
gggaagaggctcagtaatgaaatgtctccaggcacagacagctcctggcttgtgccagga
acaccagttctgagcaaaagcagaagcttctcaacacagactctggtcacaagtattaat
tctttaaagggttcaggatctaaactcagcacaaggaactttgcagcaggttataatgac
catgaagtggctggaaatttaataaaagttcatgaaacaacattgtcagacaaacatttg
cctgtggaggacttggccaatggaaggagcccacccagcagcccagcagcagaatcctct
tccaagaacccccttccagtttctccagcagctccagttctcctctcccctggccacacc
agcagggaaggcaaatgtgccaacatctcaggtttacccacactggtgcctccgtgccag
gagcagccactggaagataaaatcaacgtcagtgtggttgagctggaggacagtgacagg
gaagtcagcctgccttccctgggcagcagtgtcctgctgtgtgaggagcccccaatccct
gtggatgactgctggcaccttgggtatgtgtccccagccagaggtgacagccacagctct
ggccaggtcagccctgcaaagagcagcacgggcagcagccccaggcctggctcctggcag
gagcagggggagagcccagtgcaggtgcagggaatgcagggcagcacccctgtccaagga
ggtcctgctggcaggagaagaaccttgcagtgccctgagaagagccctattgagccatgc
tcctcagtgggcagcagagccagttacctggactccaaaatctgggatgactggaatgga
gaagagaaggaagatgaacttccagagattcttcctctgtctcagaggttggcagctgca
gcaggggctggtcagacagatcctgtcaagactcctgaaccttcctgtcaggagaacaac
aggtcccccagcactccagtgacacccatgccagcttattccatcatggagaccccgcag
ctgaagaaggagctgagcagattcggggtccgtgctctcccaaagcgccagatggtgttg
aagctgaaggagatattccagtacactcaccaggatggcgactctgactttgaggatgag
atctcctattcccagcccctgccccagaagtccccaaggcagcccaaggcaggcagggct
gggggcaggaaccgtgccggtgccccgagggctgggggcaagagaaagcagcttgccaag
ggtgatggtgcccatggaacaggctgtgccccacccaaggacagaaccaaagtgacacat
cacccagaaggagccaaagagcaggaagggccatctgagtccctggcagctgatggtgag
gagctcccagcatcccaggagtcagcacgttcttcgctggatgggagtgacatctccttt
ggttcacagagctcctttgtgaatggatttgaaacctgtgcttttacatctgaggaggag
gaagaggagtttccagcatctcaagcagcagctcgggaggaggagaagctggaggcagtc
aggtgctacatccgctcaaacacggccctgtacaacaggattctgttctacgagcccatc
gagctggctgatctgcacacagagctcaaacagaatggcattaaaatctccaaggcaaag
ctgctggacttcctggattctcagtgcatcacaaccaccatggccagagcccggaaagag
caggtgcagaaaaggaaggagagcaggaaacagaggaggagataccgagtgaagcccagc
ccgacctgctga
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integrated database retrieval system
