Zonotrichia leucophrys gambelii (white-crowned sparrow): 135454287
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Entry
135454287 CDS
T09958
Symbol
RAI1
Name
(RefSeq) retinoic acid-induced protein 1
KO
K19749
retinoic acid-induced protein 1
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zle03000
]
135454287 (RAI1)
Transcription factors [BR:
zle03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
135454287 (RAI1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
135454287
NCBI-ProteinID:
XP_064582341
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All DBs
Position
14:13938660..14012181
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AA seq
1920 aa
AA seq
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MQSFRERCGFHGNQQSYQPTSQDTSRLENYRHQSQAGPNCERQRLVAKEYYSQQQLPYAG
YENSAVEKYHRGNKQLAGQQLQGRPAFSNYTVQENSPYPARYSGDESLQAWGGQPQALPG
GVAKYEDNLMKKTVALAGGRPYHEPAATSLPFRTHFQQQPQQQQQQQQQQQQQPPALPYP
KLQRQKLPNDVSSPMPFSQSPHFGQHSQSFPASSTYSSVPGGSQPAHSYKSCTAPSGQPP
LERPLGSAASLAPGPRVPNLHGYQPNRIGYEQPPQPPPQPPQPPPPPQPPQPPQPPQPPQ
PMQGRHHASETLHYQNLAKYQHYNQPGQTYCQGDAPPVRTPEQYYQTFSPSASHSPARSV
GRSPSYSSTPSPLMPNLENFQYSQQPLSAGAFPAGIADHSHFMPLLNPSPTDGTSPDTQS
GNCKNLQKEKLPENLLSDLSLQSLTALTSQVENISNTVQQLLLSKTAVPQKKGIKTPART
PEQLKGQHCSPESSTYSAEQVGTPLSDPLSTPQSVHAETQDTDYLSGSEDQLERSFLYCN
QNRSPARVNSNSKAKPESVSTCSVTSPDDMSTKSDDSFQSIHATLPLETFTKYVSNERDC
PRLLLSALSQEELASEIIVLQDAINEKADKAWANLPMLGKETTKSPFQMENHRPSLDSMV
KGAWPSQGDSSTLTEPLKLDKASGASTGKDFSEEVYEGPQVEFTATESKDVLKDTAPLAF
NSKPSIPAATSSAGATGYSCYSNTTANSVASENAMEHFEWPEESLGEACLRWKDLQATDL
PKGLFPSKLVSSCKEKKNACGLDLCDGEQPAKSEPVQDFGQQVMEEEEETLTYDEATKAD
SERWLQDTRHCCSAGDFSEIPIISSPDLKESDLEAEEYSSLCELAGSEQKSVTYDASPPK
PPEMPAVLSSSEVPVSAEETVSTVEKESSAPTPRLSGQSVILLGPAVGTETKVKSWFKSS
LPHIQPEEENGGGETSHLEAADAESTSSVMVKQQLTPENVLGKMEPVSRGKSLRNKRVHC
RLPEGDGSGSAVLSPFDELPAASSVASACLGPDGQTEVPSKSAQSQTPRFPAEGLPARMC
TRSFTALAEPRAPAPLEGLKAPAHQEKLGKKPGCGVKQRVAFKTRKRNSRPAPRVVQNAS
DATLLVPGLVAAEEVAGPTPLEGDAVEAGERDQRSMILRSRTKTQEVFYTKRQRGKRAAD
VRLKNCKAPKKLISNNHLPPAFKLPAPGSPHKEGKVGARMKLPKAGPGMGGKMSERPLHS
LKRKSTFISPIPTKKRNLVLRSNSGGVKEEKPEGPPSLFKKMPVAKKVKAKLPPKSSGEA
IPKPPLPKEAPDVCIKITSRAAFQEATKTKVLPPRKGRGLKLEAIVQKITSPNLKKFTCK
PAATAVAATVAAYGSSLSPAGVERERLVKHSGVAVAVGDARLPKLGAAQKVPTMPVAEPL
CRNPNGRAPKGKPGGGKRLPHDGCQGEACGSTPGTQPNPNMVAKNLGLLPKKRNRKGKAA
ALGMAKAPLSPALPPALPRERAAGPGGAEEAPREKKPKTEEKEAGSSDGPAEGRSAAGPA
RGPKPRANHSNYNGYSKRQRKRLGHGKAKAVPARCKSRGKRRRQPQQAPLLHPAEPEIRL
KYISCKRLRADSRAPPFAPYVRVERRGEFSTTCTVVNSPGDEARLQRGPAGPAPRPRAAL
PASSTMHMGPVVSKALSAACLVCCLCRNPANYKDLGDLCGPYYPEDCLPKKKSRLKEKAR
AEAPGEDSAVPAAAERAPRGTEGGCGKAARPEAAAEAAKQSSLRSSPRGMFRRLQSCYCC
DERTEGEEAAEKPRRHECHKAESPPQEPAGDTQEHWLHEACAVWTAGVFLVAGKLYGLQE
AVKAAADLKCSSCQQAGATVGCCQKGCPHTYHYACAIDTGCLLTEESFSLRCPKHKRQPV
NT seq
5763 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcctttcgagaaaggtgtggtttccatggcaaccagcagagctaccagccgact
tcacaagatacatcacgcctggagaattacaggcatcaaagtcaggcagggccgaactgc
gagcggcagaggctggtggcgaaggagtactacagtcagcagcagctgccgtacgcgggc
tatgagaacagcgccgtggagaaataccaccggggaaacaagcaattagcggggcagcag
ctgcagggcaggccggccttttccaattacaccgtgcaggaaaacagcccttatccggcc
cggtattccggggacgagagcctgcaggcgtggggaggccagccacaggcactgcccggc
ggtgtggccaagtatgaggacaacctgatgaagaagacagtggcgttggcgggcgggcgg
ccgtaccatgagccggcggccacctcgctgcccttccggactcacttccagcagcagccg
cagcagcagcagcagcaacagcagcagcagcagcagcagccgcccgcgctcccctacccc
aagctgcagcggcagaaactgcccaacgatgtctcctcacccatgcccttctcacagagc
cctcacttcgggcagcactcccagtccttccctgcctcctccacctactcctctgtgccg
gggggcagccagccggcacactcctacaagagctgcacggcaccctcggggcagccgccg
ctggagcggcccctgggcagcgctgccagcctggcccctggcccccgtgtgcccaacctg
cacggctaccagcccaaccgcattggctacgagcagcccccgcagccgccaccgcagccc
ccgcagccgccgccaccaccacagcccccgcagccaccgcagcccccgcagcccccacag
cccatgcagggccggcaccacgcctcagagaccctccactaccaaaacctggccaagtac
caacattacaaccagccgggccagacctactgccagggcgatgcgccgcctgtgcggacg
ccggagcagtactaccagaccttcagccccagcgccagccactcgccggctcgctccgtc
ggcaggtccccgtcctacagctccactccctccccgctgatgcccaacctggagaacttc
caatacagccagcagcccctgagtgctggtgccttcccggccggcattgctgaccacagc
catttcatgccgctgctgaacccttctcccactgacgggacgagccccgacactcaatct
gggaactgcaaaaacttgcagaaggagaagctgcccgaaaacctgctgtcagacctgagc
ctgcagagcctgacagcactcacctcccaggtggagaacatttctaacactgtccagcag
ctgctgctctccaaaacagctgtgccccagaaaaagggcatcaagaccccagcgaggacc
cccgagcagctcaaggggcagcactgcagtcctgagagcagcacctactcggcagagcag
gtggggacccccctgtctgacccactgagcaccccccagtctgtccacgctgagacacag
gacactgactatctcagtgggtcagaggaccagctggagaggagtttcctgtactgcaac
cagaaccgcagccctgcccgcgtcaacagcaactccaaggcaaagcctgagtcagtgtcc
acctgctctgtgacctccccagatgacatgtccaccaaatcagatgactctttccagagt
atccacgccaccctgcccctggagaccttcaccaagtatgtgagcaatgaacgggactgc
ccccgactgctcctcagcgccctgtcccaggaggagctggcatctgagatcatcgtcctg
caggatgccatcaatgagaaggcagacaaagcctgggccaacttgcccatgctgggcaag
gagaccaccaagtcccccttccagatggagaaccaccggcccagcctggactccatggtg
aaaggtgcctggcccagccagggtgactccagcacgctcactgagcccctcaagctggac
aaagcttcaggggccagcacagggaaagactttagtgaggaggtgtacgagggtccccag
gtggagttcacagccactgaaagcaaggatgtgctgaaagacactgccccactggccttc
aactccaagcccagcatcccggcagcgacgtccagcgcgggagccaccggctacagctgc
tactcgaacaccaccgccaactcggtggcgtctgagaatgccatggagcatttcgagtgg
ccggaggagagcctgggcgaggcctgcctgcggtggaaggatctccaggccaccgatctc
cccaagggcttgttccccagcaaactggtgagctcctgcaaggagaaaaaaaacgcctgc
ggcttggacctgtgcgatggagagcagccagccaagagtgagccggtccaggactttggc
cagcaggtgatggaggaggaggaggagacactgacctacgatgaagcaacaaaggcagac
agcgagaggtggctgcaggacacccggcactgctgctcagctggggactttagtgagatc
cccatcatctcctcaccggatctgaaggagtcagacctggaggcagaggagtactcctca
ctctgtgagctggctggctcggagcagaagtcagtgacgtacgatgcctctccacccaag
ccccctgagatgccggccgtgctgtcctccagcgaggtgcctgtgtctgccgaggagacc
gtcagcaccgtggagaaggagagctcagctcccaccccacgcctctctggccagtctgtc
atcctgctgggccccgctgtgggcacagagaccaaggtgaaaagctggttcaaatcctcc
ctgccccacatccagcctgaggaggagaatggtggaggggagacatcccacctggaggcg
gccgatgctgaatccacctcatcggtcatggtgaagcagcaactcacacccgaaaacgtg
ctggggaagatggagcctgtctcacggggcaagagcctccgcaacaagagggtccactgc
cggctgccggagggggatggctctggcagcgccgtgctgagtcccttcgatgagctgcca
gcagccagcagcgtggccagcgcctgcctggggccagacggacagacggaggtaccgagc
aagagcgcccagagccaaacgccccggttcccagccgaggggctgccggcgcgcatgtgc
acccgctccttcactgccctggccgagccccgcgcccctgccccgctggagggactgaag
gctcctgcacaccaggagaagctggggaagaagcctggctgcggcgtgaagcagagggtg
gctttcaaaaccaggaagcgcaacagccggccggcccccagggtggtccaaaacgccagc
gatgccaccctgctggtgcccggcttggtggcggcagaggaggtggcagggccgacaccg
ctggagggggacgcggtggaagccggggagagggaccagcggtcgatgatcctgcgctcc
cgcacgaagacacaggaggttttctacaccaagaggcagaggggcaagcgggcagctgat
gtccggctgaagaactgcaaggcgcccaaaaagctcatatccaacaaccacctcccacct
gccttcaagctgccagcaccaggcagcccccacaaggagggcaaggtgggtgcccggatg
aagctgcccaaagcagggccgggcatggggggcaagatgtcggagcggccgctgcactcc
ctgaagagaaagtccaccttcatctcccccatccccaccaagaagaggaacctggtcctg
cggagcaacagcggtggcgtgaaggaggagaagccagagggtccccccagcctcttcaag
aagatgccggtggccaagaaggtgaaagccaagctgccccccaagagctctggcgaagcc
atcccgaagccccccctgccaaaggaggcccctgatgtctgcatcaagatcacctcccgg
gcggccttccaggaggccaccaagaccaaagtgctgcctccccgcaagggccgcggcctc
aagctggaggccatcgtccagaagatcacctcacccaacctgaagaagttcacttgcaaa
ccagcagccacagcagtggcagccacagtagctgcctatggctcctccctgagcccggct
ggggtggagcgggagcggctggtgaagcacagtggggtggccgtggcagtgggcgatgcc
aggctgcccaagctgggggcagcacagaaggtgcccaccatgcccgtggctgagccgctc
tgccggaaccccaatggccgagcgccaaaggggaagccgggtggtgggaagaggctgccc
catgatggctgccagggggaggcttgtgggtcaacgccgggcacccagcccaaccccaac
atggtggccaagaacctggggctgctgcccaagaagaggaaccgcaagggcaaagcagca
gcgctgggcatggccaaggcgcccctgagccctgcactgccaccagcactgccccgggag
cgtgcagccggcccgggcggtgcggaggaggcgcctcgggagaagaaaccaaagactgag
gagaaggaggcggggagcagcgatggccctgccgagggccgctccgccgccgggccggcg
cgggggccgaagccgcgggccaaccactccaactacaacggctactccaagcggcagcgg
aagcgcctgggccacggcaaggccaaggcggtgccggcgcggtgcaagagccgcgggaag
cggcggcggcagccccagcaggccccgctgctgcaccccgccgagcccgagatccgcctc
aagtacatctcctgcaagcggctgcgggcggacagccgcgccccgcccttcgctccctac
gtccgcgtggagcggcgcggagagttctccaccacctgcaccgtcgtcaactcgcccggc
gacgaggcgcggctgcagcggggaccggccgggccggcgccgcggccgcgggcggccctg
cccgcctcctccaccatgcacatggggccggtggtgtcgaaggcgctgagcgccgcgtgc
ctggtctgctgcctctgccgcaaccccgccaactacaaggacctgggggacctctgcggg
ccctactaccccgaggactgcctgcccaagaagaaatcccggctgaaggagaaggcgcgg
gcggaggcgccgggcgaggactctgccgtgcccgccgcggccgagcgggcgccccgcggg
actgagggcggctgcgggaaggcggcgcggcccgaggcggccgccgaggcggccaagcag
agctcgctgcgctccagcccgcggggcatgttccgtcggctgcagagctgctactgctgt
gacgagaggacagagggcgaggaggcggccgaaaagccccggcggcacgaatgtcacaag
gccgagtcgccgccgcaggagccggcgggcgacacgcaggagcactggctgcacgaagcc
tgtgccgtatggaccgctggggttttcctggtggcagggaagctctatgggctgcaggag
gctgtcaaggcggctgccgacctgaagtgctcgagctgccagcaagcaggagccaccgtg
ggctgctgccagaaggggtgtccccacacctaccactacgcgtgtgccatcgacacaggc
tgcttattaactgaggagagcttctctctgagatgtcccaaacataagaggcagccggtg
tag
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