Zonotrichia leucophrys gambelii (white-crowned sparrow): 135454344
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Entry
135454344 CDS
T09958
Symbol
SHMT1
Name
(RefSeq) serine hydroxymethyltransferase, cytosolic
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle00260
Glycine, serine and threonine metabolism
zle00630
Glyoxylate and dicarboxylate metabolism
zle00670
One carbon pool by folate
zle01100
Metabolic pathways
zle01200
Carbon metabolism
zle01230
Biosynthesis of amino acids
zle01240
Biosynthesis of cofactors
zle04981
Folate transport and metabolism
Module
zle_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
135454344 (SHMT1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
135454344 (SHMT1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
135454344 (SHMT1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
135454344 (SHMT1)
Enzymes [BR:
zle01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
135454344 (SHMT1)
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Motif
Pfam:
SHMT
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-GeneID:
135454344
NCBI-ProteinID:
XP_064582412
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Position
14:complement(14224540..14230036)
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AA seq
482 aa
AA seq
DB search
MASSAQGLPSAELWASHNKMVMEPLDTNDPEVHSIIKKEKQRQRLGLELIASENFASRAV
LEALGSCMNNKYSEGYPGQRYYGGTEFVDELERLCQKRALQAYRLDPQKWGVNVQPYSGS
PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSVFFESMPYKVNPKTGYI
DYDKLEENARLFHPKLIIAGVSCYSRNLDYARMRKIADDNGAFLMADMAHISGLVAAGVV
PSPFEHCDIVSTTTHKTLRGCRAGMIFYRKGTRSVDPKTGKETLYNLESLINQAVFPGLQ
GGPHNHAIAGIAVALHQAMTPEFKAYQQQVVANCKALSSALMEMGYDIVTGGSDNHLILV
DLRSKGTDGGRAERVLELCSIACNKNTCPGDVSALRPSGLRFGTPALTSRGFRQDDFRRV
AQYIHKGIELALRVQKDMSPKATLKEFKDKLEDQKYRGELKALKEEVEAFAATFPLPGLP
VL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcgagctcagcacagggcctgcccagcgccgagctctgggcctcccataacaagatg
gtgatggagccgctggacaccaatgaccccgaggtgcacagcatcatcaagaaggagaag
cagcggcagaggttggggctggagttgattgcatcggagaactttgcaagccgagcagtc
ctggaggccctgggatcctgcatgaacaacaaatactctgagggttacccaggacagagg
tactacggcgggacggagtttgtggacgagctggagaggctgtgccagaagcgagccctg
caggcttaccggctcgacccccagaagtggggagtcaatgtccagccctactcagggtca
cctgcaaactttgcggtgtacacggccctggtggagccccatggcaggatcatggggctg
gacctgcccgatggtggccacctcacccacggcttcatgacagacaagaagaagatctct
gccacctctgtcttcttcgagtccatgccctacaaggtcaaccccaagaccggttacatt
gactatgacaagctggaggagaacgcccggctcttccaccccaagctgatcatagcaggt
gtcagctgctactcgcggaacctggactacgcccgcatgcggaagatcgcggatgacaac
ggggcgttcctgatggcagacatggcgcacatcagcgggctggtggctgctggcgtggtg
ccctcgcccttcgagcactgcgacatcgtctccaccaccacccacaagaccctgcggggc
tgcagggccggaatgatcttctaccgcaaaggcacccgcagcgtggaccccaagacaggc
aaggagaccctctacaacctggagagcctcatcaaccaggcagtgttcccagggctgcag
ggaggcccacacaaccacgccattgcagggattgccgtggcactgcatcaggccatgaca
cccgagttcaaggcttaccagcagcaggtggtggccaactgcaaggcactctcatcagca
ctgatggagatgggctacgacatcgtcacagggggctctgacaatcacctgatcctggtg
gacctgcgcagcaaaggcacagacggcggccgggccgagcgggtgctggagctctgctcc
atcgcctgcaacaagaacacgtgccctggtgatgtcagtgccctgcggcccagcgggctc
cgcttcgggacaccggctctgacctcgcgtggcttccggcaggacgatttccgcagggtg
gcccagtacatccacaaagggattgagctggctctgcgtgtgcagaaggacatgagcccc
aaggccacgctgaaggaattcaaggacaaattggaggaccagaaataccgtggggagctg
aaggcactgaaggaagaggtggaagcctttgcagccacgttcccgctgccagggctgcct
gtcctgtaa
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