Zonotrichia leucophrys gambelii (white-crowned sparrow): 135454592
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Entry
135454592 CDS
T09958
Symbol
ROBO1
Name
(RefSeq) roundabout homolog 1 isoform X1
KO
K06753
roundabout, axon guidance receptor 1
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
135454592 (ROBO1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
zle04515
]
135454592 (ROBO1)
Cell adhesion molecules [BR:
zle04515
]
Immunoglobulin superfamily
ROBO family
135454592 (ROBO1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
C2-set_2
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Unc5_NetrinR_N
Ig_PDGFR_d4
DUF7908
Big_4
Ig_J_second
Motif
Other DBs
NCBI-GeneID:
135454592
NCBI-ProteinID:
XP_064582945
LinkDB
All DBs
Position
1:complement(107682702..108364845)
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AA seq
1655 aa
AA seq
DB search
MKWKHYPFLAVVAVFSLSRCHQLLGQLIPDSEDAERGNDSGTPLPTSDHGDNSLGYTGSR
LRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM
LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHNASLEVAILRDDFRQNPSDVM
VAVGEPAVMECQPPRGHPEPTISWKKDGTPLDDKDERITIRGGKLMITYTRKNDAGKYVC
VGTNMVGERESEVAELTVLERPSFVKRPSNLAVTVEDSAEFKCEARGDPVPTVRWRKDDG
ELPKARYEIRDDHTLKIRKVMAGDMGSYTCVAENMVGKAEASATLTVQEPPQFVVKPRDQ
VAALGRTVTFQCEATGNPQPAIFWRREGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQR
SDVGYYICQTLNVAGSIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTLVLNCVATG
TLMPTILWKKDGILISTQDSRIKQLETGALQIRYAKLGDTGRYTCIASTPSGEATWSAFI
EVQEFGVPVQPPRPTDPNLIPSAPSKPEVTDVSRNTVTLSWQPNLNSGATPTSYIIEAFS
HASGSSWQTVAENVKTESFAVKGLKPNAIYLFLVRAANAYGLSDPSQISDPVKTQDVPPT
SQGVDHKQVQRELGDVVLHLHNPTILSSSSIEVHWTVDQQSQYIQGYKILYRPTPASYGE
SEWLIFEVRTPTKNSVVIPELKKGVNYEIKARPFFNEFQGADSEVKFAKTLEEAPSAPPQ
SVSVTKNDGNGTAIVVTWQPPPEDNQNGMVQEYKVWCLGNESRYHINKTVDGTTFSVVIP
SLVPGIRYSVEVAASTGAGPGVKSDPQFIQLDSHGNPVSSEDQVSLAQQISDVVKQPAFI
AGIGAACWIILMVFSIWLYRHRKKRNGLTSTYAGIRKVPSFTFTPTVTYQRGGEAVSSGG
RPGLLNISEPATQPWLADTWPNTGNNHNDCSINCCTSGNGNSDSNLTTYSRPADCIANYN
NQLDNKQTNLMLPEPTVYGDVDLSNKINEMKTFNSPNLKDGRFVSQPGQPTPYATTQLIQ
SSISNNVNSGSGDTNEKHWKPSVQQKQEAPPIQYNIMEQNKLNKDYRVNDNIAPTIPYNQ
SYDQNTGGSYNSSDRGSSTSGSQGHKKGARTPKAPKQAGMNWADLLPPPPAHPPPHSNSE
DYSLSVDEGYDQEIPCPVPPARMYLQQDELEEEEEDERGPTPPVRGAASSPAAVSYSHQS
TATLTPSPQEELQPMLQDCQEDLGHTQHQPDRRRQPVSPPPPPRPISPPHTYGYISGPLV
SDMDTDAPEEEEDEADIEVAKMQNRRLLLRGLEQTPASSVGDLESSVTGSMINGWGSASE
EDNISSGRSSVSSSDGSFFTDADFAQAVAAAAEYAGLKVARRQMHEAAGGRRHFHASHCP
RPTSPVSTDSNMSAVVIQKVRPAKKQKHQPGHLRREVYTDDLPPPPVPPPAIKSPTAQSK
AQLEVRPVLLPKLASVDGRTDRSADRKGASYKGRDGAEGRQHPDLRTGSAERREPLEPPG
DGKARASKAPKRDGAPAKSHLLQEDILPYSRPTFPTSNNPRDPSSSSSMSSRGSGGRQRA
DQANLARRNVAEMQVLGAYEQGEEEEEEEMEETES
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atgaaatggaaacattatccttttctggctgtagtagctgtattcagcctgtccagatgc
catcagttactgggccagctcattccagactccgaggacgcagagagggggaacgacagc
gggacgccactccccacctctgatcacggcgacaattcgctgggctacacaggttcccgt
cttcgacaggaggatttcccgcctcgcatcgtggaacacccctcggacttgattgtttcc
aaaggagagccagccaccctgaactgcaaggcagagggaaggcccacacccaccatcgag
tggtacaaggggggagaaagggtggagacggacaaggatgacccgcgctcccaccgcatg
ctgctgcccagcggatctttatttttcctgcgcatcgtgcacgggcgcaagagccggccg
gacgaaggggtctatgtgtgtgtggccaggaattacctgggggaggctgtgagtcataat
gcatcgctggaggtggcaattctacgggatgacttcagacaaaacccctcagatgtcatg
gtagctgtgggggaacctgcagtgatggagtgccagcccccaagaggtcacccagagcca
actatatcatggaagaaagatgggacccctctggatgacaaagatgagagaattacaatc
agaggaggaaagctcatgatcacatacacaagaaagaacgacgctggcaaatacgtttgt
gttggaacaaatatggttggagaacgtgaaagtgaagttgcagagctcactgttttagag
agaccatcttttgtgaagagaccgagcaatttggcagtgactgtggaggacagtgcagag
tttaagtgtgaggcaagaggagacccagtccctacagtgagatggaggaaagatgacgga
gagctgcccaaagcaaggtacgaaatccgtgatgatcataccttgaaaatcaggaaagtt
atggcaggagacatgggatcatacacttgtgttgcagaaaatatggttggaaaagctgag
gcatcagcaaccttaacagttcaagagcctccacagtttgttgtaaagccccgagaccag
gtggctgcgctggggaggacagtgacgttccagtgtgaggcgacggggaaccctcagcca
gccatcttctggaggagagaggggagccagaacctgctgttctcataccagccccctcag
tcatccagcagattttcagtttcccagactggagacctcaccatcaccaatgtccagaga
tctgatgtggggtactacatctgccagactttaaatgttgcaggaagtatcataacaaaa
gcctacttggaagttacagatgtgatcgcggaccggccgccccctgtcatccggcagggt
cctgtgaaccagaccgtggctgtggatggcactctggtgctgaactgtgtggccacaggc
accttaatgcccaccatcctctggaaaaaggatggcatcctcatttccacccaagactct
cgcatcaagcagctggagacaggagcgctgcagatcagatacgccaagctgggcgacact
ggccgctacacctgcattgcctcaaccccgagtggcgaagccacgtggagcgccttcata
gaggtccaagagttcggagtcccagtgcagccaccaagacccactgacccaaacttgatt
cctagtgctccatcaaagcctgaggttacagatgtcagcagaaacacagtaacattgtca
tggcaaccaaatttgaattcaggtgcaacaccaacctcttacataattgaggccttcagc
catgcatcagggagcagctggcaaactgtagctgaaaatgtgaaaactgagagttttgca
gttaaagggctaaaacctaatgcaatttatctcttccttgtgagagcagctaatgcatac
gggctgagcgacccgagccaaatatctgatccagtgaaaactcaagatgttccaccaaca
agtcaaggtgtggatcacaagcaggtccagagagagctgggtgacgtggtgctgcacctg
cacaaccccaccatcctttcttcctcctcaatcgaagttcattggactgtggaccagcaa
tcccagtatatccaaggatataaaattctgtaccggcctacaccagcatcttatggagaa
tcagagtggctgatctttgaagtgaggactcccaccaaaaacagtgttgtcattcctgag
ctgaagaaaggcgtaaactacgaaatcaaggcccgccctttctttaatgagtttcaggga
gcagatagtgaagtgaaatttgcaaagaccctggaagaagctcccagcgccccacctcag
agtgtttcagtaaccaagaacgatgggaacgggacagcaatcgtggtcacctggcagcca
ccccctgaggacaaccagaacgggatggtgcaggaatacaaggtttggtgcctcggcaat
gagagccgctaccacatcaacaagaccgtggacggcaccaccttctccgtggtcatcccc
tccctcgtgcccggcatccgctacagcgtggaggtggctgccagcaccggggcaggaccc
ggggtgaaaagtgatccccagtttatccagctagattctcatggaaaccccgtgtcttca
gaagatcaagtcagtttggcccagcagatttctgatgtagtaaagcagcctgcctttatt
gctggaattggtgcagcctgttggattatcctcatggtgttcagcatctggttgtatcgc
cacaggaagaagaggaatggactcacgagtacctacgctggtatcagaaaagtcccgtct
tttaccttcacaccaacagtaacatatcagagaggaggagaggccgtaagcagtggaggc
aggcctggactcctaaacatcagtgaaccagccactcagccatggttagcagacacttgg
cctaacacagggaacaatcacaatgactgctccatcaactgctgcacctctggcaatggc
aacagtgatagcaacctcaccacgtacagtcgaccagccgattgtatagcaaattacaac
aatcagctggacaacaagcagacaaacctgatgttgcctgagccaactgtgtatggggac
gtggacctcagcaacaaaatcaatgagatgaaaaccttcaatagccccaatctaaaggac
ggaagatttgtcagccagcccgggcagcccactccttatgccaccactcagctcatccag
tccagtatcagcaataatgttaacagtggcagcggggacaccaatgagaaacactggaaa
ccctctgttcagcaaaagcaagaggctccacccatacagtacaacattatggagcaaaac
aaattaaacaaagattaccgagtaaatgacaacattgctccaactattccctacaaccag
tcttatgaccagaatacaggtggatcctacaacagctcagacagaggcagcagtacatct
gggagtcaagggcacaagaagggtgctcggaccccaaaggctcccaagcaagctggcatg
aactgggcagatcttctcccaccccctccagcacatcctcctccccacagcaacagtgaa
gattacagcctttcagtggatgaaggctatgaccaggaaattccttgtcctgtgccacct
gcaaggatgtatctgcagcaggatgagctagaggaagaggaagaagatgagcggggtcct
actccacctgtgcgaggagcagcttcctctccagccgctgtctcctatagccaccagtca
actgccaccctcaccccctctccccaggaagagctccagcccatgttacaggactgtcag
gaggatctgggacacacacaacaccaacctgaccggagacgtcaacctgtgagtcctcca
ccccctccaaggcccatctccccacctcacacgtacggatacatctcagggcccttggtg
tccgacatggacacggacgccccggaagaggaggaggacgaggcggatatcgaggtggcc
aagatgcagaacaggaggctcctgctgcgtggcctggagcagacccctgcctccagcgtc
ggggatctggagagctccgtgacgggctccatgatcaatggctggggctcggcctccgag
gaggacaacatctccagcgggcgctccagcgtcagctcctccgacggctccttcttcacc
gacgccgactttgcacaggccgtggcggcagccgccgagtacgccgggctcaaagtggcc
cggaggcaaatgcacgaggcagcaggaggccgtagacattttcatgcatcgcactgtccc
agacccaccagccctgtatccaccgacagcaacatgagtgctgttgtaatacagaaggtc
cgacctgccaaaaagcaaaaacaccagccaggacatctgcgcagagaagtctacacagat
gatctgccccctcctccagtgccccctccggccatcaagtccccgacggcgcagtccaag
gcgcagctggaggtgcggccggtgctgctgcccaagctggcctcggtggacggcaggacg
gacagatcggcggacaggaagggagccagctacaagggcagggacggggcggagggcagg
cagcaccccgacctgcggacgggctcggccgagcgccgggagcccctggagccgccggga
gacggcaaagcgcgagccagcaaagcaccaaaacgcgacggcgcaccagcaaagagtcat
cttctccaagaggacatcctgccatattctagaccaacatttccaacatcaaataatcct
agagatcccagctcctccagctccatgtcgtcaagagggtcaggaggcagacagagggca
gatcaagcaaatctagcccgaaggaatgttgcagaaatgcaagtactgggagcctatgaa
caaggagaagaggaagaagaagaagagatggaggaaacagaaagctga
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integrated database retrieval system
