Zonotrichia leucophrys gambelii (white-crowned sparrow): 135454694
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Entry
135454694 CDS
T09958
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03030
DNA replication
zle03410
Base excision repair
zle03420
Nucleotide excision repair
zle03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
135454694 (RFC5)
03410 Base excision repair
135454694 (RFC5)
03420 Nucleotide excision repair
135454694 (RFC5)
03430 Mismatch repair
135454694 (RFC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zle03032
]
135454694 (RFC5)
03036 Chromosome and associated proteins [BR:
zle03036
]
135454694 (RFC5)
03400 DNA repair and recombination proteins [BR:
zle03400
]
135454694 (RFC5)
DNA replication proteins [BR:
zle03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
135454694 (RFC5)
DNA Replication Termination Factors
ELG1-RFC complex
135454694 (RFC5)
Chromosome and associated proteins [BR:
zle03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
135454694 (RFC5)
DNA repair and recombination proteins [BR:
zle03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
135454694 (RFC5)
Check point factors
HRAD17(Rad24)-RFC complex
135454694 (RFC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_22
AAA_16
AAA_24
AAA_11
AAA_lid_RFC1
AAA_assoc_2
DEAD
nSTAND_NTPase5
AAA_14
ResIII
RuvB_N
DUF815
AAA_5
AAA_30
AAA_19
DNAX_ATPase_lid
PhoH
TniB
AAA_7
TIP49
ATPase_2
nSTAND3
AAA_25
Thioredoxin_6
IstB_IS21
bpMoxR
Hydantoinase_B
Gp44_lid
AAA_28
Motif
Other DBs
NCBI-GeneID:
135454694
NCBI-ProteinID:
XP_064583117
LinkDB
All DBs
Position
15:12283511..12286179
Genome browser
AA seq
355 aa
AA seq
DB search
MAPAGSANLPWVEKYRPQALSELVSHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTIL
ACARQLYREREFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMT
QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQ
EEGVDVTEDGMKALVTLSSGDMRRALNILQSTSMAFGKVTEENVYTCTGHPLKSDIANIL
DWMLNQDFSTAYRKIMELKTLKGLALQDILTEIHLFVHRGGERLQMILERPNSPLPFTEC
FLLSTVDFPPSIRIQLLIKLADIEYRLAAGTSEKIQLSSLIAAFQVTRDLVVAEA
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atggcgccggcgggcagcgcgaacctgccgtgggtggagaagtaccgtccgcaggcgctg
tccgagctggtgtctcaccgggacatcctcagcaccgtgcagcgcttcatcagcgaggac
cggctcccccatctgctcctctatggaccgcccggtaccgggaagacatccaccatcctg
gcctgtgcccggcagctctaccgggagcgggagttcggctccatggtgctggagctcaac
gcctccgatgaccggggcattgacatcgtccgagggcccatcctgagctttgccagcacc
aggaccatctttaagaaaggcttcaagctggtgatcctggatgaagccgatgccatgacc
caggatgctcagaacgccctgaggagagtgatcgagaagttcacagagaacacgcggttc
tgcctcatctgtaactacctctccaagatcattcctgccctgcagtcccgctgcacccgc
ttccgcttcgggccgctgaccccggagctgatggtgccgcggctccagcacgtcatccag
gaggagggggtggacgtgaccgaggacgggatgaaggctctggtgaccctctcgagcggg
gacatgcgcagggccctcaatatcttgcagagcacctccatggcctttgggaaggtgaca
gaggagaacgtttacacctgcacgggacatcccctcaagtctgacatcgccaacatcctc
gactggatgctgaaccaggatttttccacggcctaccgcaaaatcatggagctgaagacg
ctgaagggcctggccctgcaggacatcctcactgagatccatctcttcgtgcacagaggt
ggggaaaggctccagatgatcctggagaggccaaactcccccctgcccttcactgagtgt
ttccttctctccacagtcgacttccccccctccatccgcatccagctgctgatcaagctg
gcagacatcgagtaccgcctggctgctggcaccagcgagaagatccagctgagctccctc
atcgccgccttccaggtcaccagggacctggtggtggctgaagcctga
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integrated database retrieval system
