Zonotrichia leucophrys gambelii (white-crowned sparrow): 135454842
Help
Entry
135454842 CDS
T09958
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188
KO
K14311
nuclear pore complex protein Nup188
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135454842 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135454842 (NUP188)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
135454842 (NUP188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
DUF948
Motif
Other DBs
NCBI-GeneID:
135454842
NCBI-ProteinID:
XP_064583450
LinkDB
All DBs
Position
17:complement(5483798..5509909)
Genome browser
AA seq
1737 aa
AA seq
DB search
MAAGGLSARSSRELWTILLGRSALREPAQIAAELNKHWQRLLEGLSYYKPPSTTSAEKIK
ADKDVAAPLKELGLRVSKFLGLDEEQSVQLLQSYLQEDYRGTRDSLKTVLQDERQSQALM
LKLADYYYEERICILRCVLHLLIYFQDERHPYTAQYFQCVEKLDKELVPNYRKQFEALYK
AEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEVIFLYYAYFEMAPEELLAFAKMFKEQ
GFGTRQTNRHLVDESMDHLVDRIGYFSALILVEGMEIDSLHERALDDRTEEHKLANNQHI
HQEMDNQLLQLGDVSHHAPVLLAWALLRHTINPDESTNIIRKMGSTAIQLNVFQYLTKLL
RSLSSGGKNCTASTACMCIYGLLSFVLTSLELHTLGNQQDIIDAACEVLAASSIPQLFWK
TEPTAGLGIILDSVCGMFPHLLTPLLQLLQALVSDKSTAKKVYSFLDKMSFYIELYKHKP
PDVISHEDGTLWRRQAPKLLYPLGLGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWTL
FTCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDVSIADCLLPITSRIYMLLQRLT
TVISPPVDVIASCVNCLTVLASRMPAKVWTDLHHTGFLPFVANPLSSMNHMISAEGMNAG
GYGNLLMSMEQPQGEYSVTISFLNLVTTLVRGQLGSTQSQGLVPCIVFVLKEMLPNYHRW
RYNSHGVREKIGCLILQLIHAILNLCPEMDPRSSNAPSLQSLCIFSLANTEAGQAVINIM
GIGVDTIDMVMASQSSSDESQGQGQLLIQTVKLAFSVTNNVIRLKPPSSVVSPLEQALTQ
HGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRDAFLT
HLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSDGSKEFSLGEWSCLQVVL
ELIDSKQQERYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTNPLFGTLPP
PSESSELSVLDTCALIMKIICLEIYYVVKGSLDQSLKDTLKNFSSKKRFAYWSEYVRALA
QHVAETEGSSCASATEYQMLISAWRMLLIISTSHADIMHLTDSAVHQELFLDVLNGTRVL
LQVPMSVPCLQLGSMLCTLLLILLKQWKRELSSVDKIINSLTQILEGVLQADQQMMEKTK
AKVFSALITVLQMKEMKVNDIPQYPQLVLSVCETLQDEVIALLDQTRHSLSVGDAADDKD
SMETDDASRVRHKDQRDGVCVLGLHLAKELCEVDEDGDYWLQITRKVPVLPTIFAALEIS
LRVKQNLHFTEASLHLLLTLARTQQGAAAMAGAGVTQSVCLPLLSVYQLSTNGAIQTSAS
SRKSLDAPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFVGVHQERILQCLNAVRTVQSL
ACLEEADHTVGFILQLSNFTKEWHFHLPQLMRDMQVNLCYLCQACTSLLHSRKMLQHYLQ
TKNGDSLPSSVTPRVQRNPPASSKPPSPESEAAEQKALLTVQYSLLKILSKSLAALRHFT
PDVCQILLDQSLDLAEYNVLFVLSFTTPAFDSDVAPSFGTLLATVNVALNMLGEMDKKKE
PFPQAAGLNMQEGTKTLKSLLMFTMENCFYLLISQAVRYLRDPAVHPRDKQRMKQELSSE
LSTLLSSLSRYFRRGGPSSPASGVLPSPQGKSASKLGPEGQEPLFQLVQAFVRHVQR
NT seq
5214 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggcgggctgagcgcgaggagcagcagagaattatggacaattctgctgggc
agatcagctttaagagaaccagcccagattgctgcagagttgaacaagcactggcagagg
ctgttagagggactgtcctactacaaaccaccaagtaccacttcagcagaaaaaattaaa
gctgataaagatgttgctgctccactaaaagagttgggtctgagagtcagcaagtttttg
ggtctggatgaagagcagagtgtgcagttgttacaatcttatcttcaagaggattacaga
ggaacaagagactccttgaagacagttcttcaggatgaaaggcagagtcaggctctgatg
ctgaagctcgctgactactactacgaggagaggatctgcatcctgcgctgcgtcctccac
ctgctcatctacttccaggacgagagacacccttacacagcacagtacttccagtgcgtt
gaaaagttggacaaggagctcgttcccaattaccgcaagcagtttgaagcgctctacaaa
gcagaggctcctacatgggaaacacatggaaatctgatgacagaacgtcaggtttcccgg
tggttcgtgcagtgccttcgggagcagtccatgctcctggaagtcatcttcctctactat
gcatactttgaaatggcacctgaggagctgctggccttcgcaaagatgttcaaggagcag
ggatttggcacaagacaaaccaacagacatttagtagatgagagcatggatcacctcgtg
gatcgtattggctactttagtgctcttattctggtggaaggcatggaaattgactccctc
catgagcgtgctttggatgacaggacagaggagcacaagttggccaacaatcagcacatc
caccaggagatggacaatcagctgctgcagttaggggatgtctcacatcacgctccagtg
cttttggcctgggctctgctccgccacaccataaacccagatgagtccacaaacatcatc
aggaagatgggcagcactgctatccagctgaatgtcttccagtatctgacaaaactgctg
agatccctcagcagtgggggcaagaattgtactgccagcacagcctgtatgtgtatttat
ggacttctttcctttgtcctgacatcactggaattgcatacattgggcaatcagcaggat
ataattgatgctgcatgtgaagttctggcagcttccagcattcctcagctcttctggaag
acggaacctactgcaggtctgggtatcatcctggacagtgtttgtgggatgttcccccat
cttctcactcctctccttcagctgctccaagcccttgtgtctgataaatctactgcaaaa
aaggtatacagtttcctggataaaatgtccttctatattgagctgtacaagcacaaacct
ccagatgtgatctcccatgaggacggcacactgtggcggagacaggctccaaagctcctc
tatcctcttggactaggtcagacaaacctacggatccctcagggaacagtgggccaggtg
atgctggatgatcgggcttatctggtacgctgggagtattcctacagcagctggactctg
ttcacctgtgagattgagatgctgctccatgttgtgtcaacagcagatgtgattcagcat
tgccagagggtcaagcccataattgatctggttcataaagtcatcagcactgatgtatca
atagcagattgtcttctgccaatcacatcacgaatctacatgctcctgcagaggctaaca
actgtaatctctccccctgtggatgttattgcttcttgtgtcaattgcttgacagtcctg
gcttctcggatgccagccaaggtttggactgaccttcaccacacagggttcttgccattt
gttgccaatccactgtccagtatgaatcacatgatcagtgcagagggaatgaatgctggg
ggctatggaaaccttttgatgagcatggagcagccccagggcgagtacagtgttaccatc
tccttcctgaacctggtaacaactcttgtccggggacaacttggtagcacccagagccaa
ggcctggtgccctgcattgtgtttgttctgaaggaaatgttaccaaattaccacagatgg
agatacaactctcatggagtgagagagaaaatcgggtgcctaattctgcagctgatccat
gcaattctgaacttatgtcctgaaatggatcctcgcagcagcaatgcccccagcctgcag
tccttgtgcatcttcagcctggccaacacagaggcagggcaagctgtcattaacatcatg
ggcattggggtggacaccattgacatggtcatggcctcccagtccagcagtgatgagtcc
caaggccaagggcagctgctgatccagacagtgaagttggcattctctgttaccaacaac
gtcatccggctgaagcccccgtccagcgtggtgtcacccctggagcaggcactcactcag
catggtgctcatgggaacaaccttattgctgtcttggccaaatacatctaccacaagcat
gaccctgcacttccacgcctggccatccagctgctcaaacgactggctacagttgctccc
atgtctgtgtatgcctgcctgggcagtgacgctgccgccatccgcgacgccttcctcacc
cacctgcagagcaagatcgaggacatgcgcatcaaggtcatgatcctggagttcctcaca
gtggcagtggagacacagcctggcctcattgagctgttcctcaacttggaagtgaaggat
ggcagtgatgggtcaaaggaattcagcctgggggagtggagctgcctccaagtggtgttg
gagctgattgactccaagcagcaggagaggtactggtgccctcccctcctgcaccgcgcc
gccatcgccttcctgcacgcgctgtggcaggaccgtcgtgacagcgccatgctcgtgctg
aggacaaaaccaaagttctgggaaaatttaactaatcccctctttgggacccttcctccg
ccttctgaatcatcagagctcagtgtcttggatacctgtgccttaataatgaaaatcatc
tgcttggagatctactatgttgtcaagggctcactggaccagtccctgaaggacactctg
aagaatttctccagcaagaagcgctttgcctactggtcagagtacgtgagggccctggcc
cagcacgtggcagagaccgagggcagcagctgcgcctccgccaccgagtaccagatgctc
atctcagcctggaggatgctgctcatcatctccacaagccatgctgatatcatgcatctg
actgattctgcagttcatcaggagttgtttctggatgtgctgaatggcaccagggttttg
ctccaggttcccatgtcagtgccctgtctgcagctggggtccatgctgtgcacccttctt
ctgatcctgctcaagcagtggaaacgcgagttgagttctgtggataaaatcataaactcc
ttgacgcagattctggagggagtactacaggcagatcagcagatgatggagaaaaccaaa
gccaaagtgttctcagctcttatcactgttctgcaaatgaaggagatgaaagtgaatgac
atcccccagtacccccagctggtgctgagtgtgtgtgagactctgcaggacgaggtcatc
gctctcttggaccagacccggcacagcctgagcgtgggcgatgctgcagacgacaaggac
agcatggagacggacgacgcgtcccgcgtgaggcacaaggaccagcgggatggggtgtgt
gttctgggtttgcacctggctaaggagctctgtgaagtggatgaagatggagattactgg
ctgcagattactcggaaagtccctgtgcttcctaccatctttgctgcactggagatcagc
ctgagggttaaacaaaaccttcacttcacagaggcctcgttacatctgctgctgacccta
gcaaggactcagcagggagcagcagcaatggctggagctggtgtcacccagagcgtctgc
ctgcccctcctgagcgtgtaccagctcagcaccaatggagccatccagacttctgcctca
tcccggaaatccctggatgcgccctcctggcccggggtctatcggctctccatgtccctc
atggaacgtctgctcaaaacactcagatacaacttcctgacagaagctctggactttgtg
ggtgtccatcaggagaggatccttcagtgcctgaatgcagtacggactgtgcagagcttg
gcctgtctggaagaggctgatcacactgttggcttcattcttcagctctcaaatttcaca
aaggagtggcatttccacctgccacagcttatgagggacatgcaggtgaatctgtgttac
ctgtgccaggcctgtacctccctcctgcacagccgtaaaatgctccagcactacctgcag
acaaagaacggcgactccctcccctccagcgtgacgccccgcgtgcagcgcaaccccccg
gcctcctccaagccccccagccccgagtcagaggcagcagagcagaaggccctgctcaca
gtgcagtacagcctcctcaaaatcctcagcaagtccctggctgccctgcgccacttcacc
cctgatgtctgccagatcctccttgaccagtctctggaccttgctgagtacaacgtgctc
tttgtcttgagtttcaccacaccagcctttgactcggacgttgcaccttcctttgggacc
ctccttgccacagtcaacgtggccctgaacatgctgggagagatggataagaagaaagaa
cctttccctcaggctgcagggctgaatatgcaagagggaaccaaaaccctcaagtctctg
ctgatgtttacaatggagaactgtttctacctgctgatctcgcaggccgtgcggtacctg
cgggacccggccgtgcacccgcgggacaagcagcgcatgaagcaggagctcagctcggag
ctgagtacgctgctctccagcctgtcccggtacttccgcaggggagggccctcttcccct
gccagcggggtccttccctctccccagggcaagtctgcctccaagctgggtccagagggg
caggagcccttgttccagctggtgcaggcctttgtccggcacgtgcagagatag
DBGET
integrated database retrieval system
