Zonotrichia leucophrys gambelii (white-crowned sparrow): 135455048
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Entry
135455048 CDS
T09958
Symbol
WHRN
Name
(RefSeq) whirlin isoform X1
KO
K21879
whirlin
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
zle03037
]
135455048 (WHRN)
Cilium and associated proteins [BR:
zle03037
]
Primary cilia and associated proteins
USH complex and associated proteins
135455048 (WHRN)
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Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
HHD_RTEL1
CCM2_C
USH1C_N
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
135455048
NCBI-ProteinID:
XP_064583924
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All DBs
Position
17:8841641..8896056
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AA seq
928 aa
AA seq
DB search
MSAELDGVSVHSSSSSSGSLGSAPGPAPRPLSANVRRLHQALTTLLSEAERERFILCLNA
YHGRRNVCDLVRSLRALLDGPRRRQLLPLLRLVLPRSDQLLFDQYTAEGPYLPPPGRPPP
PPAPPPVLPGELRQVTLRRSKAHEGLGFSIRGGAEHGVGIYVSLVEPGSLAEREGLRVGD
QILGVNGKSLDRVTHAEAVKVLKGCKKLNLSVHSVGRIPGGYVTNHIYTWVDPQGRSVSP
PSGLPHHQHSSLRRDSEKRSHLQLLQEGDEKKVNLVLNEGKSLGLMIRGGAEYSLGIYIT
GVDKGSEAESTGLKVGDQILEVNGRSFLSIPHDEAVKLLKSSRHLMMTVKDIGRLPHART
TVDETRWISSSQLGETLLSSAGAVGDHAMDVAARAVPCALQPVFYRGLAGSQVTLSTMVN
QSRVMLEEQARHLLNEQERATMGYYLDEYKEGNISVDALVMALFELLNTHAKFSLLSEVR
GVISPQDLDRFDNLVLKREIESMKARQPAGPSPDSYSMMSYSDTVSSSSSHFTATTVSSA
RERLLWLIDLMENTSELEGAGDCHQSSINTLPDVSLDDLSSFPEEPPDFKPPPPPSAPQT
LEPCSAQPRIPAGKDKPKRPSSESSQSGLFFVAPRNPSPPPNPPEKDTLSVTSTATEDSN
PSAIYATISPLSPRSQPKDSPLSLLSQHPIGPFPRVQSPSRLKSPSPEGPQSPPAPSPPP
PPPHPAPPPPDKGSPSAVGNQHFIMVEVHQPNSEPDVNEVRPLPQARASTLSQLSDSGQT
LSEDSGVDIGEVETSGKDRSRQPGPGKSRSPKEATRSEGAAEGASKPPGLLEPTSCLIRV
SKSAPTLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGKLKVGHVILEVNGTGLRGKEHRE
AARIIAEAFKLKDKDYIDFLVTEFNVAL
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcggagctggacggcgtgtccgtgcactcctcctcctcctcgtcgggctcgctg
ggctcggcgccggggccggctccgcggccgctctcagcgaacgtgcggcggctgcaccag
gcgctcacaacgctgctgagcgaggcggagcgggagcgcttcatcctctgcctcaacgcc
taccacggccgccgcaacgtctgcgacctggtgcgctccctgcgcgccctcctcgacggg
ccccgccggcggcagctgctgccgctgctgcgcctcgtcctgccgcgctccgaccagctc
ctcttcgatcagtacacggccgaggggccgtacctgccgccgcccggccgccccccgccg
ccccccgccccgccgccggtgctcccgggcgagctgcggcaggtgacgctgcgccggagc
aaagcccacgagggtctgggcttcagcatccgcggcggcgccgagcacggcgtgggcatc
tatgtgtcgctggtggaacccggctctctggccgagcgggaggggctgcgagtcggcgat
cagatcctaggggtgaacggcaagtccctggacagggtgacccacgccgaggcggtcaag
gtgctgaagggctgcaagaagctgaacctgtcggtgcactcggtggggcgcatccccggg
ggctatgtcaccaaccacatctacacgtgggtggacccgcagggccgcagcgtgtccccc
ccctcggggctgccccaccaccagcacagctccctgcgcagggacagcgagaagaggagc
cacctgcagctgctgcaggagggggatgagaagaaggtgaacctggtcctgaacgaaggg
aaatccctgggcctcatgatccgaggaggggcagaatattccctgggcatctacatcacg
ggtgtggacaagggctccgaggcagagagcactggcttgaaggtgggagaccagatcctg
gaggtgaacggccggagcttcctgagcatcccccacgacgaggccgtgaagttgctcaag
tcctcgcggcacctgatgatgacggtgaaggacatcgggcgcctgccccacgcccgcacc
accgtggatgagacccgctggatcagcagctcccagctcggggagaccctgctcagctct
gcaggggccgtgggtgaccatgccatggatgtggcagccagggctgtcccctgtgccctg
cagcccgtgttctaccgggggctggccggctcgcaggtgaccctgagcaccatggtgaac
cagagccgcgtgatgctggaggagcaggcccggcacctgctcaacgaacaggagagagcc
accatgggctactacctggacgagtacaaggagggcaacatctccgtggatgctctggtc
atggccctcttcgagctgctcaacacacacgccaagttctcgctgctctccgaggtgagg
ggggtgatctccccacaagacctggaccgctttgacaacctggtgctcaagagggagatc
gagtccatgaaggcccggcagcccgcggggcccagccccgactcctactccatgatgtcc
tacagcgacaccgtctcatcctccagcagccacttcactgccaccaccgtcagctcagcc
agggagcggctcctgtggctcatagacctgatggagaacacgtcagagctggagggagct
ggggactgccaccagagcagcatcaacaccctgccagatgtgtccctggatgatctctcc
tccttcccagaggaaccgcccgatttcaagcctcctcctcctccctcagccccgcagacc
ctggagccctgctcagcccagccccgcatcccggcggggaaggacaagcccaagcgcccc
tcgtccgagtcctcccagtccggccttttcttcgtggccccccgcaacccctctccccct
cccaaccctcctgagaaggacacgctcagcgtcacctccacggccaccgaggattccaac
cccagcgccatctacgccaccatctcccccctgtcccctcgcagccagcccaaggacagc
ccgctgtccctgctcagccagcaccccatcgggcccttccccagggtgcagtcccccagc
aggctcaagagcccgtccccagaggggcctcagagccccccggccccgtcccctcctccg
ccaccccctcaccctgcgccccctcccccggacaagggcagcccctcggccgtgggcaac
cagcatttcatcatggtggaggtgcaccagcccaacagcgagcccgacgtcaacgaagtg
aggcccctgccccaggccagagcctccacgctctcccagctgtcggacagcgggcagacc
ctcagcgaggacagcggggtggacatcggggaggtggagacgagcggcaaggacaggagc
cggcagccaggccccggcaagagccgcagccccaaagaggccaccaggagcgagggggcg
gcagaaggggcctccaagccgccagggctcctggagcccacgtcgtgtctgatccgggtg
tccaagagcgctcccaccctgggcatcgccatcgagggcggcgccaacacgcggcagccg
ctgccccgcatcgtcaccatccagcggggtggctcggcacacaactgcgggaagctgaag
gtgggacacgtcatcctggaggtgaacggcacggggctgcggggcaaggagcaccgcgag
gccgcccgcatcatcgccgaggccttcaagctgaaggacaaggactacatcgatttcttg
gtcacagagttcaacgtggccctttag
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