Zonotrichia leucophrys gambelii (white-crowned sparrow): 135455054
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Entry
135455054 CDS
T09958
Symbol
TNC
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04510
Focal adhesion
zle04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135455054 (TNC)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135455054 (TNC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
zle00536
]
135455054 (TNC)
Glycosaminoglycan binding proteins [BR:
zle00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135455054 (TNC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
EGF_TEN
Fibrinogen_C
EGF_Teneurin
EGF_2
EGF_Tenascin
Fn3_Dep-1_2nd
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
EGF
Interfer-bind
NDNF
hEGF
Big_5
Motif
Other DBs
NCBI-GeneID:
135455054
NCBI-ProteinID:
XP_064583940
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All DBs
Position
17:8524777..8603040
Genome browser
AA seq
1594 aa
AA seq
DB search
MGLPSRVLACAILALLSQHVTGGLIKRIIRQKRETGLNVTLPEDNQPVVFNHVYNIKLPV
GSLCSVDLDSASGDADLKAEIEPVKNYEEHTVNEGNQIVFTHRINIPRRACGCAAAPDIK
DLLSRLEELEGLVSSLREQCASGAGCCPNSQAAEGRLDTTPYCSGHGNYSIDICGCVCEP
GWKGPNCSQPSCPNDCNDQGKCVDGLCVCFEGYTGPDCSQELCPQGCGAHGRCVGGQCLC
HEGFVGDDCSVPLCPHNCHGRGRCVDSECVCDEGYTGEDCSELICPNDCFDRGRCVNGTC
FCEEGFTGEDCGELTCPNDCHGNGRCENGLCVCHEGFVGDDCSERRCPNDCHNRGRCVGG
RCVCHEGYLGEDCAELRCPNDCHNRGRCENGQCVCHEGFIGEDCGELRCPNDCHNRGRCE
NGQCVCHEGFTGDDCGQLRCPNDCHNRGLCVNGQCVCDEGYTGEDCGELRCPNDCHNRGR
CVEGRCECDNGFTGEDCGELSCPNDCHGRGRCINGRCVCDEGFVGEDCRERSCPNDCNNA
GRCVDGRCVCEDGYIGDDCSDVSPPTELTVTNVTDKTVNLEWKHENLVNEYLVTYVPTSS
GGLDMQFTVPGNHTAATIHELEPGVEYFIRVFAILKNKKSIPVSARVATYLPAPEGLRFK
SVRETSVQVEWDPLNFSFDGWELVFHNMKKDDNGDITSSLKRPETSYMQPGLAPGQQYNV
SIHIVKNNTRGPGLSKVITTKLDAPSQVEARDVTDTTALITWSKPLAEVEGVELTYGPKD
IPGDRTTIDLSEDENQYSIGNLRPHTEYEVTLVSRRGDMESDPVKEVFVTDLDAPRNLKR
VSQTDSSITLEWKNSHANVDNYRIKFAPISGGDHVEITAPKGSQATTRATLTGLRPGTEY
GIGVTAVRNDRESAPATINAGTDLDNPKDLEVSEPTETTLSLRWRRPVAKFDHYRLVYTS
PSGKKGEVEIPVDSSSFLLRGLEPGTEYTISLQAEKGRHKSKPTTVKGSTEAEPEVDNLL
VSDATPDGFRLSWTADEGVFNSFVLKIRDTKRKSDPLELIVPGHERTQDITGLKEGTEYE
IELYGISSGQRSQPVNTVASTVVGSPKGISFSDITENAATVSWTPPRSRVENFRISYVPV
TGGTPNVVTVEGSKTRTKLVKLVPGVDYNVSVISVKGFEESEPVSGILKTALDSPSGLVV
MNITDSEALATWQPAIAAVDNYVVSYSSEKEPEVTQLVSGNTVEYDLQGLQPATEYRLSV
HAQKDTQRSESLSTHFTTGLDAPRDLSATEVQSEAAVMSWRPPRAPVTGYLLIYESIDGT
VKEVILNPETTSYSLTELSPSTQYTVKLQALSGALRSKTIQTILTTTGLLYPYPKDCSQA
LLNGEATSGLYTIYLNGDKAQPLQVFCDMGEDGGGWIVFLRRQNGKQDFYKNWNTYVAGF
GDPNEEFWIGLENLHKITSQGQYELRVDLRDKGDTAYAVYERFSVGDAKSRYRLRVDGYS
GTAGDSMTYHNGRSFSTFDKDHDSAITNCALSYKGAFWYKNCHRVNLMGRYGDNNHSQGV
NWFHWKGHEYSIQFAEMKLRPSSFRNLEGRRKRA
NT seq
4785 nt
NT seq
+upstream
nt +downstream
nt
atgggactccccagccgggtcttggcctgtgccatcctcgctttgctgtcccagcacgtc
actgggggactcatcaagagaattatccggcagaagagggagactgggctgaacgtgacc
ttgccagaggataaccagcctgtggttttcaaccatgtctacaacattaagctgcccgtt
ggctccctctgctccgtggacctggactcggcgagcggcgacgccgacctgaaggcggaa
attgagcccgtcaagaactacgaggagcacacggtgaacgagggcaaccagattgtcttc
acacacaggattaacattccccggcgggcctgtggctgtgcagctgccccagacattaag
gatctgctgagcagactggaggagctggaggggctggtctcctccctgcgggagcagtgt
gccagcggggctggatgctgtcccaattcccaggcagcagaaggtcgcctggacaccaca
ccctactgcagcgggcacggcaactacagcatcgacatctgcggctgcgtctgcgagccc
ggctggaagggccccaactgcagccagccctcgtgtcccaacgactgcaacgaccagggc
aagtgcgtggatgggctgtgcgtgtgctttgagggctacacgggcccagactgcagccag
gagctctgcccccagggctgcggtgcccacgggcgctgcgtgggcgggcagtgcctgtgc
cacgagggttttgtgggtgacgactgcagtgtgcccctgtgcccccacaactgccacggc
cgcgggcgctgtgtggacagcgagtgtgtgtgcgatgagggctacactggtgaggactgc
agcgagctcatctgccccaacgactgcttcgaccgcgggcgctgcgtgaacggcacctgc
ttctgcgaggagggcttcaccggcgaggactgcggcgagctcacctgccccaacgactgc
cacggcaacgggcgctgcgagaacgggctgtgcgtgtgccacgagggctttgttggtgat
gactgcagcgagaggaggtgccccaacgactgccacaaccgcgggcgctgcgtgggcggg
cgctgcgtgtgccacgaggggtacctgggcgaggactgcgcggagctgcggtgccccaac
gactgccacaaccgcgggcgctgcgagaacgggcagtgcgtgtgccacgaggggttcatc
ggggaggactgcggggagctgcggtgccccaatgattgccacaaccgcgggcgctgtgag
aacgggcagtgcgtgtgccacgaggggttcactggggatgactgcggccagctacggtgt
cccaacgactgccacaaccgtgggctgtgcgtcaacgggcagtgcgtgtgcgatgagggg
tacacaggcgaggactgcggggagctgcgctgccccaatgactgccacaaccgcgggcgc
tgcgtggaggggcgctgtgagtgtgacaatggcttcacaggggaagactgtggcgagctc
tcctgccccaacgactgccacgggcgtgggcgctgcatcaacgggcgctgcgtgtgcgat
gagggctttgtgggcgaggattgtcgggagcgctcctgccccaacgactgcaacaacgca
gggcgctgcgtggacgggcgctgtgtctgcgaggatggctacatcggggatgactgctct
gatgtgtctcctccaactgagctgactgtgaccaacgtgacagacaaaactgtcaatctg
gagtggaagcacgagaacctcgtcaacgagtacctcgtcacctacgtccccaccagcagc
gggggcttggacatgcagttcaccgtgccaggaaaccacacagctgccaccatccacgag
ctggagccaggggtggagtacttcatccgtgtctttgcaatcctgaaaaacaagaagagt
attccagtcagcgccagggtagccacatatctgcctgctccagaaggtctgaggttcaaa
tctgttcgggaaacgtccgtccaggtggagtgggaccctctgaacttttcttttgatggc
tgggagctggtcttccataatatgaaaaaggatgataatggtgacataaccagcagcttg
aaaaggccagagacatcctacatgcagccaggtttggcccctgggcagcagtacaatgtg
tccatccatatcgtgaagaacaacaccagaggaccaggcctatccaaagtcatcaccaca
aagcttgatgcccccagccaggtggaggccagagacgtcactgacaccacagctctcatc
acatggtccaaacccttggctgaagttgaaggtgtagagctcacttatggccccaaggac
attccaggggacaggacaaccattgacctctctgaagatgagaaccaatactccattggc
aacctgaggccgcacacagagtacgaggtgacgctggtgtctcgtcgaggggacatggag
agcgaccctgtgaaggaagtctttgtcacagacctggatgctccaaggaacctgaagagg
gtgtcccagactgacagcagcatcaccctggagtggaagaacagccacgccaacgtcgat
aattaccgaatcaagttcgctcccatctctggtggggaccacgtggagatcacagcgccc
aagggcagccaggccacaaccagagctacactcacaggtttgaggcctggaactgaatat
ggcattggagtgacagcagtgaggaatgacagggaaagtgctcctgctaccatcaacgct
ggcactgaccttgataaccccaaggacctggaagtcagcgagcccactgagaccaccctg
tccctgcgctggagaaggcccgtggccaagtttgaccactaccgcctggtttacaccagt
ccctcggggaagaagggcgaagtggagatcccagtggacagcagctccttcctgctgcgg
gggctggagccaggcaccgagtacaccatcagcctgcaggcagagaagggacggcacaag
agcaaacccaccactgtcaagggctccacggaagcagaacccgaggtcgacaacctcctg
gtttcagacgcaaccccagatggattccgtctctcctggactgcagatgaaggggttttc
aacagctttgttctaaaaatcagggacaccaaaaggaaatctgaccccctggagctgata
gtgccaggccatgagcgcacccaggacataacagggctgaaagagggcactgaatatgag
attgagctctatggaattagcagtggacaacgttcccagcctgtaaacacagtagcatcc
acagtggttggctctcccaaggggatttccttctctgacatcacagaaaatgctgccaca
gtcagctggaccccccctcgctcccgcgtggaaaatttccggatctcctacgtccctgtc
acaggaggtactccaaatgttgtcacagttgaggggagcaagacaaggaccaagctggtg
aagctggtcccaggtgtggactacaacgtcagcgtcatctctgtgaaaggctttgaagaa
agcgagcccgtctctggcatcctgaaaacagctctggacagcccatcaggcctggtagtg
atgaacatcacagactctgaggctctggcaacctggcagccagcaattgctgctgtggat
aactacgtggtgtcctactcttctgagaaagagccagaggtgacccagctggtgtcaggg
aacacggtggagtacgacctgcaggggctgcagcctgccaccgagtacaggctgagcgtc
cacgcgcagaaggacacgcagaggagcgagagcctctccacgcacttcaccacagggctg
gatgctccaagggatttgagtgccactgaggtgcagtcagaagcagctgtgatgagctgg
aggcctccccgtgctccagtcactggatatctcctgatctatgaatccatcgatggcaca
gtcaaggaagtcatcctaaaccccgagacaacttcctacagcctgacagagctgagcccc
tccactcagtacacggtgaaactgcaggccctgagtggggccctgaggagcaaaaccatc
cagaccatactcaccaccactgggctcctctatccctaccccaaggactgctcccaggcc
ctgctgaatggagaagccacctctgggctctacacaatttacctgaacggggacaaggct
cagcctctgcaggtgttctgtgacatgggcgaggacggcggcggctggattgtgttcctg
aggcgtcagaatggaaagcaagatttctacaagaactggaatacttatgtggcagggttt
ggagatcctaatgaagaattctggataggtctggagaacctgcacaaaatcacttctcag
ggccagtacgagctgcgggtggacctgagggacaagggggacacggcctacgccgtgtac
gagcgcttcagcgtgggcgacgccaagagccgctaccgcctgcgcgtggatggctacagc
ggcactgcaggtgactccatgacctaccacaatggaaggtccttctccacctttgacaag
gaccacgactctgccatcaccaactgtgctctgtcatacaaaggagctttctggtacaag
aactgccaccgagtcaacctgatgggcagatatggtgacaacaaccacagtcagggcgtc
aactggttccactggaagggccacgagtattccatccagtttgcagagatgaagctgaga
ccctccagcttcaggaacctggaggggcggcggaagcgagcgtag
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integrated database retrieval system
