Zonotrichia leucophrys gambelii (white-crowned sparrow): 135455842
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Entry
135455842 CDS
T09958
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
135455842 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zle03400
]
135455842 (LIG3)
Enzymes [BR:
zle01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
135455842 (LIG3)
DNA repair and recombination proteins [BR:
zle03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
135455842 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
aRib
DUF3802
Motif
Other DBs
NCBI-GeneID:
135455842
NCBI-ProteinID:
XP_064585405
LinkDB
All DBs
Position
19:complement(5638245..5653103)
Genome browser
AA seq
980 aa
AA seq
DB search
MPTGGRTLSHAARALGRGTALFCPRPQLPASRPLSRRAGASRGCWCQLLSQPVPVPSPQP
AVPLSLLLGSWLRSACAAAGDMAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVPNP
FTESGGDMKEWYHVKCIFEKLDKARATTKKIEDITDLEGWEELQDEEKETINKYISEANS
KTGGTPKKKVIVQAKLTATGQLTTKDPPKKFSGFSAKPKNSEDSPAKPSSQKPSLSAARC
DPQHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLRKGSAGDGFHGDVYLTIKMLLPGV
IKIVYNLNDKQIVKLFSRIFNCNQEEMVRDLEQGDVSETIRIFFEQSKTCPPAAKSLLTI
QEVDEFLMQLSKLTKEDDQQSVLQQISRRCTGNDLKCIIRLIKHDLKMNAGAKHVLDALD
PNAYEAFKASRNLQDVVERVLQNQQEAEKVPGLKKTLSVQASLMTPVQPMLAEACKSIEY
AMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFPGGQS
MILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDISLMDRPLCERR
KFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLVLKDLKGNYEPGKRHWL
KVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCSGGHD
DATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKKAPVWEITGAEFSKAEA
HTADGISIRFPRCTRIRDDKDWQTATNLQQLKELYQLSKEKADFSVTAGEEDESTAGSSG
ENDGNSRSSTPHSSIKSPPSKSPAKAQKAEDSKGVIESPQKSEERRGEKRKASEMEDNGK
KQPLLDIFTGVKLYLAPSVPDFARIRRYFIAFDGDLVEEFDTASATHVLGGDIDDNPGAQ
RVTPRWIWECIRKRRLVAPC
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgggcggcaggacgctgtcacacgctgcccgcgctctcggcaggggcacagcg
ctgttctgccctcgcccacagctccccgcgtccaggccgctgtcccgccgtgccggagcc
agccgcgggtgctggtgccagctgctgtcccagcctgtcccggtgccatccccgcagccc
gcggttcccctgtcgctgctgttgggcagctggctgcgctcagcctgcgcggctgccggg
gacatggcggagcagcgctactgcgtggactatgccaagcgaggcaccgcgggctgcaag
aagtgcaaggagaagatcgtgaaggggatggtgcgcattgggaagattgttccaaatcct
ttcaccgaatctggaggggacatgaaggagtggtaccacgtcaagtgcatctttgagaag
ctggataaggcccgggccaccactaagaaaattgaagacatcacagatttggaggggtgg
gaagaactgcaggatgaggagaaagaaacaatcaacaagtacatctcagaagccaattcc
aagactggaggcactccaaagaaaaaggtgatagtgcaggcaaaactcactgccacagga
cagctgaccacaaaagatccaccaaagaaattctctggattctctgccaagccaaagaat
tcagaagattctcctgccaagccttcctcgcagaagccgagcctgtctgcagccaggtgt
gacccccagcacaaggactgcctgctgcgcgagttccgcaagctctgcgccatggtggct
gagaaacccagctacaacgtcaaaacccagatcatccaggacttcctcaggaagggatct
gcaggagatggttttcatggtgatgtatacctgaccattaagatgctgttaccaggtgtc
attaaaatagtttacaacttgaatgataagcagattgtaaagctgttcagcaggattttt
aactgcaaccaggaagaaatggtccgggacctggagcagggagatgtttctgagaccatc
agaatcttctttgagcagagcaagacctgtcctccagcagccaagagcctcctgaccatc
caggaggtggatgagttcctcatgcagctgtccaagctcaccaaggaggatgaccagcag
agtgtcctgcagcagatcagtcgcaggtgtacaggcaacgacctgaagtgcatcatcagg
ctaattaagcatgacttgaaaatgaatgctggagcaaagcacgtgttggatgctctggat
cccaatgcctacgaggcattcaaggcctcgaggaacctgcaggacgtggtggagagggtg
ctgcagaaccagcaggaggcagagaaggtgccagggctgaagaagaccctgagtgtgcag
gcctcactcatgaccccagtgcagcccatgctggctgaggcctgcaagtccatcgagtat
gccatgaagaagtgtcccaacgggatgtacgccgagatcaagtacgacggcgagcgcgtg
caggtgcacaagaacggggatcacttcagctacttcagcaggagcctcaagcctgtgctc
ccccacaaagtagcccatttcaaggatttcatcccccaggctttccctggtgggcagagt
atgattctagattcagaagttctcctgattgacaataaaactggcaagccacttcctttt
gggactcttggtgtgcacaagaaagctgctttccaggatgccaacgtttgcctgtttgtg
tttgactgcatctacttcaatgacatcagcctgatggacaggcccctctgtgaacggcgc
aagttcctccacgacaacatggtggagatccccaacaggatcctgttctcagagatgaaa
catgtcacaaaagcttcagatctggcagacatgatcacccgggtcatccgggaggggctg
gaagggctggtgctgaaggatttaaagggtaattatgagccagggaagcgccactggctg
aaggtgaagaaggattatctcaacgagggggcaatggctgacactgctgacctggtggtg
ctgggggctttctatggacaaggcagcaaaggtgggatgatgtccatcttcctcatgggc
tgctacgaccccaagagtgagaagtggtgcacggtgaccaagtgctctggtggccacgat
gacgccaccctggcacgtctgcagacagagctggacatggtgaagatcagcaaggatcct
agtaaaattccaaggtggctaaaaatcaacaaaatttactatccagacttcattgtccca
gatccaaagaaggccccggtgtgggagatcacgggggccgagttctccaaggccgaggcg
cacacggctgacgggatctccatccgcttcccgcgctgcacgcgcatccgcgatgacaag
gactggcagacagccaccaacctgcagcagctcaaggagctgtaccagctctccaaggag
aaggctgatttcagtgttacagctggggaggaagatgagtccacagctggcagcagtgga
gagaatgatggcaattccaggtcttccacacctcacagcagtattaagagtcccccaagc
aagtcacctgcaaaagcccagaaggcagaagacagcaaaggagtcattgaatcccctcaa
aaatccgaggagagacgaggggagaagagaaaagcatctgagatggaggacaatggaaaa
aagcagcccctgctggacattttcacgggggtgaagctgtacctggcgccctcggtgccg
gactttgcgcggatccgccgctacttcatcgccttcgacggggacctggtggaggagttc
gacacggcctcggccacccacgtgctcggtggggacattgatgacaaccccggggcgcag
cgggtgacgcccaggtggatctgggagtgcatcaggaagcgcaggctggtggcgccgtgc
tag
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