Zonotrichia leucophrys gambelii (white-crowned sparrow): 135455855
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Entry
135455855 CDS
T09958
Symbol
BRIP1
Name
(RefSeq) Fanconi anemia group J protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03440
Homologous recombination
zle03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
135455855 (BRIP1)
03460 Fanconi anemia pathway
135455855 (BRIP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zle03400
]
135455855 (BRIP1)
Enzymes [BR:
zle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135455855 (BRIP1)
DNA repair and recombination proteins [BR:
zle03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
135455855 (BRIP1)
FA (Fanconi anemia) pathway
Downstream FA components
135455855 (BRIP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
HBB
ResIII
ARCH_RTEL1
Motif
Other DBs
NCBI-GeneID:
135455855
NCBI-ProteinID:
XP_064585459
LinkDB
All DBs
Position
19:9140521..9254727
Genome browser
AA seq
1425 aa
AA seq
DB search
MPSEGAQYTIGGVKILFPCKAYPSQLAMMNAIVKGLNNRQHCLLESPTGSGKSLALLCSA
LSWQQALYEKSVPSSSCDKEDRRAAPSPPCHCRCHSQARSSEAAASGTPSAPCSASYPEP
GTSRRPGSPLPSTECKESETLASKLSAKKKLSLHASENDDFQVDRKRIRPLETEQQVRKR
HCLAKGVQLVDALEVYHQRKNGELIVHSEKSMKTTTCSPQTPPGPCTECCCASGKEPGKD
PSHTKKKENGDRLCVPKIFFGTRTHKQISQISRELKRTAYSCVPMTILSSRDYTCIHPVV
SNSGNRSEMCVELLEGKHGKSCSFYHGVHKLSEQPALQPGHGLYQAWDIEDLVRLGRKLR
ACPYFAARELMVGADIVFCPYNYLLDPQIRDSMDINLKDQVVILDEAHNIEDCARESVSY
GVSERQLRAAREELDFMVSNSIRQEHHEPLRAVCCSLINWLQESSGQLVERAFESACKVW
SGKEMLNFLHQMGITGITFPILQKHLAAVLEKEEKVSMHGREEIIEVPVVSPAAQIVLKG
LFMVLSCLFKENSRFADDYRVALQQTYTWMTEDQRDDADKSSFFPRPKHKKSSRQKTLVH
MLNFWCLNPAVAFSDLNEVRTIVLTSGTLSPMDSFSSELGVKFSIQLEANHVIRNSQVWV
GTVGTGPSGRELCATFQHTETFEFQDEVGALLLSVCQTLGQGILCFLPSYKMLDKLKERW
MHTGLWRNLEDVKTVIAEPQGGAKSDFDELLKIYYDAIKCKGEKDGALLIAVCRGKVSEG
LDFCDENARAVVTIGIPFPNVRDLQVELKRKYNDQHKSTRGLLSGSQWYEIQAYRALNQA
LGRCIRHRNDWGALILVDDRFRKNPNKYITGLSKWIRQQVQHHGSFGSALRSLRAFALRN
QSRGEPWAEPGPEPPAQPCRPSPGSPQHSSSALCPAVPATSHSLDPEVHCTTTIGSVHPA
AWDQPSDSMAAVKPSEQKVDVESHSHHVKQKRTHMDCTPKMAAIKAEREEVNGWSSADGV
EQKCCPEPLTATPAAQNCRATGSSSQEHGNGPREPADHPNQCQSALIAEHTPSAAESCLE
TSRVSVQSAGGHPGAEPCRELPPAAGRAEPSALDGDEDEDESIYYTPELYDDAEPEEQRT
EPPEPACPSTGNWGECGNPRVPALVASSPSGALDGAGAGRSPPGSMEAVRGRASTAGAQQ
GAAQDTPKRKISLSRSRNKGLKIQRRCSRRKAALRQSGSSRERKKEAHKQPCRKGLACVV
CGAEILPKAQGILRKACYSNSELQIIWKLFRNANIRSKESINNCKCKLEAISEDDNVMLV
ISDAASLGHLKETLKVYQMPVKDLNGSLSLNALWNEKESSLTSYLQCRSCVLQSISPSPL
IGAEVTHFSNKVQSWVWLLPSSVHYCLLLQNPPELQPGHLDSGLS
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgccctctgagggggcacagtacaccatagggggggtgaagatcctgttcccctgcaag
gcttacccctcccagctggccatgatgaacgctattgtgaaaggcttgaataacaggcag
cactgtttgctggagagccccacaggaagtggcaaaagcttggcattactttgttctgca
ctatcatggcagcaggctttgtatgagaagtcagtgccaagctcgtcgtgtgacaaggag
gacaggagggcagcgccatccccgccctgtcactgcaggtgtcactcccaggccaggagc
agcgaggctgcagcgagtgggactcccagtgctccttgttctgccagttatcctgagcca
ggaacttccaggagacctggcagccctctgccaagcacagaatgtaaggaaagtgaaaca
ctagcttcaaagctgtctgccaaaaagaagttatcccttcatgccagtgagaatgatgat
ttccaggtggacaggaagaggattcgtcctttagagacagagcagcaggtgagaaaacgt
cactgccttgctaaaggagtgcagctggttgatgctctggaggtttatcaccagaggaaa
aatggagagctgattgttcactctgaaaaaagcatgaaaaccactacttgttctccccaa
acacctcctggcccttgcactgagtgttgctgtgcttctgggaaggagccaggtaaagat
cccagtcacacaaagaagaaagagaacggagatcggttgtgtgttcccaaaatttttttt
gggacacgaacacacaagcaaatcagccagatcagcagggagctgaagaggacagcgtat
tcctgtgtgcccatgacaatcctgtccagcagggattacacctgcattcatcctgtggtg
tccaacagtggcaacaggagtgagatgtgtgtagagttgctggaaggaaaacatggcaag
tcctgctctttttaccacggtgtccacaagctgagtgagcagcctgccctgcagcctggc
catgggctgtaccaggcctgggacattgaggacctggtgaggctgggcaggaagcttcgt
gcctgcccctactttgcagccagggagctgatggtgggggcagacatcgtcttctgtccc
tacaactatctgctggacccacagatccgggacagcatggacattaacctgaaggaccaa
gtagtcattttggatgaagcccacaacattgaggactgtgctcgggagtcggtgagctac
ggggtcagcgagaggcagctgcgcgctgcccgcgaggagctcgacttcatggtcagcaac
agcatcaggcaggagcaccacgagcccctccgagctgtctgctgctccctgatcaactgg
ctgcaggagagctctgggcagctggtggagagagcctttgaaagtgcctgcaaggtgtgg
agtggcaaagaaatgctcaacttcctgcaccaaatgggaataactggcatcactttcccc
attctacagaaacatcttgctgctgtcctggaaaaagaagaaaaagtttctatgcatggc
agagaggaaattattgaggtgccagttgtgagccctgcagcacagatcgtgctcaaaggc
ctgttcatggtcctttcctgtctcttcaaagagaacagcaggtttgcagatgattacagg
gttgctctacaacaaacttacacctggatgactgaagaccaacgtgatgatgcagataaa
agttccttcttcccaaggcccaagcacaaaaagagttccaggcagaaaacccttgtccac
atgctgaacttctggtgcttgaaccctgctgtggctttttctgacttaaatgaagtcaga
acaattgttctgacatcaggcactctctctcccatggattccttttcctcagagcttggt
gtgaagttttccatccagctggaggccaatcacgttatccggaattcccaggtgtgggtt
ggcacagtgggcacgggccccagcgggcgggagctctgtgccaccttccagcacaccgag
accttcgagttccaggacgaggtgggggccctgctgctgtcggtctgtcagacactcggc
caagggattttgtgctttttgccatcctacaagatgctggacaagttaaaggagcgttgg
atgcacacaggcctgtggaggaacctggaggacgttaaaactgtcattgcagagccccag
ggaggggccaagagtgactttgatgagctgctgaaaatctactacgatgcaatcaagtgc
aaaggagaaaaagatggggctctgctgattgctgtgtgcagagggaaggtcagtgagggg
ctggatttctgcgatgagaacgccagggccgtggtgaccatcggcatccccttccccaac
gtcagggacctgcaggttgaattaaagaggaagtacaatgaccagcacaaaagtacaaga
ggacttttatcagggagtcagtggtatgagatccaagcttacagagctctcaaccaagcc
ctgggaaggtgtataaggcacaggaatgactggggggctcttattttggttgacgaccgc
ttcaggaagaaccccaataaatacataactgggctgtccaagtggatccggcagcaggtg
cagcaccacggctccttcggcagcgccctgcgctccctgcgcgccttcgccctgcgcaac
cagagccggggggagccctgggcagagcccggccccgagccccctgcccagccctgccgc
ccctccccgggctccccgcagcacagcagctctgctctgtgccctgctgttcctgccaca
agccacagtttggacccagaagttcattgcactacaaccatcggctcagttcaccccgca
gcctgggatcagcccagtgacagcatggcagcagtcaaaccaagtgagcagaaagttgat
gtagagagccattcccaccatgtaaaacagaaaaggacacacatggactgcacccccaaa
atggcagcaatcaaagcagagagagaagaagtgaatggctggagcagtgctgatggtgtg
gagcagaaatgctgccctgagcctctgactgcaactcctgcagcccagaactgcagggcc
acaggcagcagcagccaggagcatgggaacgggcccagggagcctgctgaccatcccaat
cagtgccaatcagcgttaattgcagagcacacaccaagtgcagcagaatcatgtttggaa
acaagccgtgtttcagttcagagcgctggaggccatcctggagctgagccctgcagggag
ctccctccagcagctgggagagctgagccttcagcattagatggggatgaggatgaggat
gagagcatttactacaccccagaactgtatgatgatgcagagccagaggagcagagaact
gagcccccagagccagcctgtcccagcactgggaactggggggaatgtgggaaccccaga
gtccctgctctggttgccagcagcccctcaggagccctggatggagctggggctggcagg
agcccccctggcagcatggaggctgtgaggggcagggccagcacagctggagcacagcag
ggagcagcccaggacaccccaaaaaggaaaatcagcctctccagatccagaaataaagga
ttgaaaattcagaggagatgcagcagaaggaaggctgcccttaggcaaagtggctcctcc
agagagagaaagaaggaagcacacaagcagccttgcaggaaaggactggcctgtgttgtg
tgtggagctgagatcctgcccaaagctcagggaattttgagaaaagcttgctacagtaat
agtgagctgcaaataatctggaaactcttcagaaatgccaatataagaagcaaagaatcc
attaataattgtaagtgtaagctcgaggccatttcagaagatgacaatgtgatgttggtc
atctcagatgctgcaagtcttggtcaccttaaagagactttgaaggtttatcagatgcca
gtgaaagacctgaatggcagtttatctttaaatgctctttggaatgagaaggaatcttct
ctgacaagttacttgcagtgcaggagctgtgtccttcagtccatttctccaagccctctg
ataggagctgaggttactcatttcagtaacaaagtgcagtcatgggtctggctgcttccc
tcctctgttcattattgcttgctgctacagaaccctccagaactgcagccaggacattta
gattctggtttatcttag
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integrated database retrieval system
