Zonotrichia leucophrys gambelii (white-crowned sparrow): 135455874
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Entry
135455874 CDS
T09958
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03030
DNA replication
zle03420
Nucleotide excision repair
zle03430
Mismatch repair
zle03440
Homologous recombination
zle03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
135455874 (RPA1)
03420 Nucleotide excision repair
135455874 (RPA1)
03430 Mismatch repair
135455874 (RPA1)
03440 Homologous recombination
135455874 (RPA1)
03460 Fanconi anemia pathway
135455874 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zle03000
]
135455874 (RPA1)
03032 DNA replication proteins [BR:
zle03032
]
135455874 (RPA1)
03400 DNA repair and recombination proteins [BR:
zle03400
]
135455874 (RPA1)
Transcription factors [BR:
zle03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
135455874 (RPA1)
DNA replication proteins [BR:
zle03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
135455874 (RPA1)
DNA repair and recombination proteins [BR:
zle03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
135455874 (RPA1)
MMR (mismatch excision repair)
135455874 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
135455874 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
DUF4939
IBR
Motif
Other DBs
NCBI-GeneID:
135455874
NCBI-ProteinID:
XP_064585484
LinkDB
All DBs
Position
19:6688092..6710999
Genome browser
AA seq
613 aa
AA seq
DB search
MSVRLSEGAIAAIMQGEEVSKPVLQVINTRAIATGTGPPRYRVLMSDGVNTLSSFMLATQ
LNSLVEDERLSARCVCQVNRFIVNSLKDGRRVVILMDVNVLQTADQVGGPIGNPQPYSEA
QGQRSAAPAGNPAASKPQQQNGNLSGAGPAAPKYHAPSHQFGKASAPSALKTPGGSQIKV
VPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRATAFNDQADK
FFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFTNETSVVPCDDAQHLPSVQFDFVS
ISDLENTPKDSIVDVIGICKSYEDVTKITVKANNREVSKRNVHLMDTSGKLVTATLWGNE
AEQFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTVVINPDSPEAFKLRGWFDSEGQLLEC
TSISDVRGGPAAGANTNWKTLFEAKSENLGQGDKADYFSCVGTIVHLRKENCMYQACPSQ
DCNKKVIDQQNGLYRCEKCDREFPNFKYRLMLLVTIADCLEYQWVTCFQDTAEFILGQNA
AFLGELKEKNEQAFEEVFQNANFNTYEFRIRVKLETYNDESRIKATALDVKPVNYREYSK
RLIANIRRNAQLG
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgcggctgagcgaaggggccattgcggccataatgcaaggggaggaggtctcc
aagcccgtgctgcaagtcatcaacacacgggctattgccacaggaactgggcccccacgg
taccgagtgctgatgagtgatggggtgaacaccctctcctcattcatgttggcaacacag
ctcaactccctggtggaagacgaacgcttgtcagcccgatgtgtttgccaggttaacaga
ttcattgtcaacagcctcaaagatggaaggagagtggtgatcctgatggatgtgaatgtc
ctgcaaactgctgatcaggttggtgggcccataggcaatccccagccatacagtgaggca
caagggcaacgttctgcagctccagcaggaaacccagcagccagcaaaccacagcagcaa
aatggcaatttgtctggagcaggtcctgctgctcccaagtaccacgctccctcgcaccag
tttggaaaagcgagtgctcccagtgccctgaagacacctggggggtctcagatcaaagtg
gtgcccattgccagcttgaatccataccagtccaagtggaccatttgtgctcgtgttacc
caaaaaggtcagatccgcacgtggagcaactctcgtggggaaggaaagctcttttccata
gagctggttgatgaaagtggtgagattagagctactgcattcaacgatcaagcagacaag
ttctttccactcattgaattgaacaaggtatattattttaccaaaggcaatttgaagact
gctaacaagcaatatacagctgttaagaatgactacgagattacattcactaatgagact
tcagttgtgccctgtgatgatgcccagcatcttccatctgttcagtttgattttgtatcc
atctctgacttggagaacacgcccaaagactcgattgttgatgtaattggaatttgcaag
agctacgaagatgtcactaaaattacagtgaaagctaacaatagggaggtttcaaagagg
aacgtgcatctgatggatacatcagggaaactggtgacagctacactgtggggaaatgag
gctgaacagtttgatggctccagacaacctgtgattgccatcaaaggagcccgtgtctct
gactttggtggcagaagcctgtctgtcctgtcctccagcacagttgtcatcaaccctgat
agcccagaggctttcaagctccgaggatggtttgactctgaggggcagcttctggaatgt
acctccatctctgatgtgaggggtgggccagcagctggagcaaataccaactggaaaact
ttgtttgaagccaaatctgagaacttgggacaaggagataaggcagattattttagctgt
gtgggcaccattgtacatctgcgcaaggagaactgcatgtaccaggcgtgtccctcgcag
gattgcaacaagaaggtgatagaccagcagaacggactttaccgctgcgagaagtgcgac
cgcgagttccccaacttcaagtaccgcctgatgctcctggtgaccattgcagactgtctg
gaatatcagtgggtgacttgttttcaagacacagcagaattcattcttggccaaaatgct
gcttttctgggagaactgaaggaaaagaacgagcaggcttttgaagaagtgttccaaaat
gcaaacttcaacacctacgagttcaggatccgggtgaagctggagacttacaacgacgag
tctcgtattaaggccacagcactggacgtcaaacccgtgaactacagagaatacagcaag
aggttgattgccaacatcaggaggaatgctcagctgggatga
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