Zonotrichia leucophrys gambelii (white-crowned sparrow): 135456687
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Entry
135456687 CDS
T09958
Symbol
EXOSC10
Name
(RefSeq) exosome complex component 10 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135456687 (EXOSC10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135456687 (EXOSC10)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
135456687 (EXOSC10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
135456687
NCBI-ProteinID:
XP_064586778
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Position
21:5170014..5186013
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AA seq
898 aa
AA seq
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MAAAGREGSPAGQPGSSRMPPGTEGSSTMSALPGFDSPDAFVKYALGTVVAATKASNGLP
QPGDEYDFYCSFPGFRAYCSTQSDRLLRCMSQVMQYHGCRSLMQDSSKVTGLEDKFDMLV
DSNDVILERVSILLDEASGVNRNQQPVLPAGLQPPQMIVSSWNRKAGEYHKRSQSETFRL
LHAKNISRPQLKFREKIDNSNTPFVPKIFVKPNALKPLPEALTKSGRQRKERPEDLDVPA
ALADFIHQQRTQKTEQDMFAHPYQYELEHFSPPDEVLKKPELQMYRPMEETPCHFITTLD
ELVELNEKLMTCKEFALDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMNILNET
FTDPAIVKVLHGADSDVEWLQRDFGLYLVNVFDTHQAARLLNLGRHSLDHLLKLYCNVDA
DKKYQLADWRIRPLPEEMIRYAREDTHYLLYIYDKVRELLWERGKEQPTQLQVVWQRSRD
ICLKKYIKPLFTDESYLDLYRRQKKHLDTQQLAAFRLLFAWRDKIARQEDESTGYVLPNH
MLLKIAEELPKECQGIIACCNPVPPLVRQQVNELHLLIQQAREMPLLKSEMTSATRKRAP
LPNPEKLENALFGPHDSSRIPMEDFQNNSALDPALVLEDVCLFSDSERTKDIQDNQPEST
CLVATTTVSIFSECDENKGNKKTLTTAQRKAQLIMESFENPFKMYLPPEENSAYVSQSAK
FDPSSKIYEISNRWKLVSQAPGQKKPKNETNKKAAQQPAAPAQTQKLNKKPAQNVVSVRQ
QAMQEQANRKKERDTSEIGAETGAELPTQEKKRQKKTQQPEELEALRQFTPFDYSNSSFK
VFAGGSKSKQSPQFDPAKQAHTGKKFAGTNKLQQSGNRSMSYLVGKAERGSTHHWPKR
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagccggccgtgaggggagcccggcggggcagccgggcagctccaggatgccc
ccgggcacggagggaagcagcaccatgtcggccttgcccggcttcgacagccccgacgcc
ttcgtcaagtacgctctgggcacagtggtggctgcaacaaaagcatccaacgggctcccc
cagcctggagacgagtacgatttctactgcagcttccctgggttccgcgcctactgcagc
acccagagcgaccgcctgctccgctgcatgagccaggtgatgcagtaccacggctgccgg
agcctcatgcaagattccagcaaagtgacagggctggaagataagtttgatatgctggtt
gactccaatgatgtcattcttgaaagagtgagtattttattggatgaagcatcaggagtg
aatagaaaccagcagccagtcctgccagctgggttacagcccccacagatgattgtgtcc
agctggaaccgtaaggcaggagagtaccacaaaagatctcagtctgaaacattccgactg
cttcatgccaagaatatttctcgaccgcagctgaagtttcgtgaaaagattgacaattcc
aacactccctttgtacctaaaatttttgtcaaaccaaatgctttgaagcctttgcctgaa
gccctcacaaaaagtggacggcagagaaaggagcgccctgaggacttggatgtgccagct
gctttggcagacttcatacatcagcagaggacgcagaaaactgagcaagacatgtttgct
cacccttaccagtatgaactggagcatttttctccaccagatgaagttctcaagaaacct
gaactccagatgtacaggcccatggaggaaacaccctgtcattttatcaccacactggat
gagctggtagaactaaatgaaaagcttatgacttgtaaagaatttgccttggacttagag
caccactcctacaggagcttccttggcttgacgtgtctgatgcagatttccacccgaaca
gaagatttcatcattgataccctggaactgcgcagtgacatgaacatcctcaatgagacc
ttcacagaccctgcaattgtgaaggtccttcatggtgctgattcagatgtggaatggctg
caaagagactttggtctgtacttggtgaatgtgtttgatactcaccaagctgctcgtctc
ctcaatcttggcagacattctttggatcacttgctgaagctgtattgcaatgtagatgct
gacaagaaataccagctggctgactggagaatacgccctttgccagaagaaatgatccgg
tatgcccgtgaggacactcactacctgctctacatctatgataaagtgagggagctgctg
tgggagagaggcaaggagcagcccacccagctgcaggttgtgtggcagcgcagcagggac
atctgcctgaagaaatacatcaagcccctctttacagatgaatcctaccttgatctctac
aggaggcagaaaaaacaccttgatacccaacagctggcagcattcaggctgctgtttgca
tggagagacaagatagcacggcaagaggatgagagcacagggtatgtgctacccaaccat
atgctgttgaagattgcagaggagctgcccaaagaatgccagggtatcattgcttgctgt
aaccctgtcccaccccttgttcggcagcaggttaatgaattgcatctgctcattcagcag
gcccgagagatgcctcttctcaagtctgagatgacttcagcaaccaggaagagagcacct
ctgcccaaccctgagaagctggagaatgccctctttggaccacatgacagctcacggatt
cctatggaagattttcagaataactctgccttggaccctgcactggttttggaagatgtt
tgtctcttttcagacagtgagaggacaaaggatattcaagataatcagccagaatcaaca
tgtcttgttgctactaccactgtcagcatattcagtgaatgtgatgaaaacaaaggaaat
aagaagactttgaccactgcacagcggaaagctcagctaataatggagtcctttgaaaat
ccatttaaaatgtatctacctccagaggagaattctgcctatgtctcacaatctgcaaag
tttgacccatcatcaaagatttatgaaatcagcaatcgatggaagttggtgagtcaggca
ccaggacagaagaagcccaagaatgaaaccaataagaaagcagcccagcagccagctgcc
cctgcccagacacaaaagttgaataaaaagccagcacagaatgttgtatcagttcgccag
caagccatgcaggaacaagctaataggaagaaggagagagacacaagtgaaataggagca
gaaacaggagcagagctgccaacacaagaaaagaaacggcagaaaaaaacccagcaacca
gaggagctggaggcactaaggcagttcaccccctttgattacagcaattccagcttcaaa
gtgtttgcaggaggcagcaaatcaaaacaatcaccacaatttgatcctgccaagcaagct
cacacaggcaagaaatttgctggaactaacaaacttcaacagtctggaaaccggagcatg
tcctacctggtggggaaagctgaaaggggttcgacacaccactggccaaagagataa
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