Zonotrichia leucophrys gambelii (white-crowned sparrow): 135456880
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Entry
135456880 CDS
T09958
Symbol
USP39
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 39
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135456880 (USP39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zle03041
]
135456880 (USP39)
Spliceosome [BR:
zle03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
135456880 (USP39)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
135456880
NCBI-ProteinID:
XP_064587112
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Position
22:269782..274260
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AA seq
594 aa
AA seq
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MRTAYSVAAMSSRGRRDRESREPREQRGASTARASSRSRRDADGERPRGRRDSERERARR
EAAEALPVDLARVKREPGTGTGSSVWGGSATAGPAAPVRVKREREPDGDSDPEPEPAVRY
GRFDPEDQRSRHCPYLDTINKSVLDFDFEKLCSISLSHINVYACLVCGKYFQGRGLKSHA
YIHSVQLSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTAQHIAHLDKQAKLS
RAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEENYRRIQRPPGDIMFL
LVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKNFQITKQGDGVEFLSWFLNALHA
ALGGTKRKKKTIVTDVFQGSMRIFTKKLPHPDLPAEEKAQLLQNSEYQERMVESTFLYLT
LDLPTAPLYKDEKEQLIIPQVPLFSILAKFNGSTEKEYKTYKENFLKRFQLTRLPPYLIF
CIKRFTKNNFFVEKNPTIVNFPITNVDLREYLSEEVQAAHSHTTYDLIANIVHDGKPSEG
SYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRREEDETNQQQGA
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgcgtacagcgtacagcgtcgccgccatgtcgagccgcgggcggcgggaccgggagtcc
cgggagccccgggagcaacgcggggccagcaccgcccgcgcctcctcccgcagccgccgc
gacgccgacggagagcgcccgcggggccggcgggactcggagcgggagcgcgcgcggcgg
gaggcggcggaggcgctgccggtggatctcgcgcgcgtcaagcgagaaccgggcaccggc
accgggagcagcgtctgggggggctccgctactgccgggcccgccgcgcccgtgcgggtg
aagagggagcgggagccggatggagactccgaccctgagcccgagcccgccgtgcgttac
gggcgcttcgaccccgaggaccagcgcagccggcactgcccctacctggacaccatcaac
aagagcgtgctggacttcgactttgagaagctctgctccatctccctgtcccacatcaac
gtctacgcctgcctcgtctgcgggaagtacttccagggccgcgggctgaagtcgcacgcc
tacatccacagcgtgcagctgagccaccacgtgttcctcaacctgcacacgctcaagttc
tactgcctgcccgacaactacgagatcatcgactcctccctcgaggacatcacgtacgtg
ctgaagcccacgttcacagcccagcacatcgcccacctggacaagcaggccaagctgtcg
cgggcctacgatggcaccacgtacctgcctggcatcgtggggctcaacaacatcaaggcc
aacgactacgccaacgccgtgctccaggccctgtccaacgtgcctcccctgaggaattac
ttcctggaggaggagaactaccggcgcatccagcgcccgcccggggacatcatgttcctg
ctggtgcagcgcttcggggagctcatgaggaagctctggaacccgcgcaacttcaaggcc
cacgtgtccccccacgagatgctgcaggccgtggtgctctgcagcaagaagaacttccag
atcaccaagcagggggatggggtggagttcctgtcctggttcctgaacgcgctgcacgct
gcgctgggcggcaccaagaggaagaagaagaccatcgtcaccgacgtgttccagggctcc
atgcgcatcttcaccaagaagctgccgcaccctgacctgcccgccgaggagaaggcgcag
ctgctgcagaacagcgagtaccaggagcgcatggtggagtccacgttcctgtacctgacc
ctggacctgcccacggcgccgctctacaaggacgagaaggagcagctgatcatcccccag
gtgcccctgttcagcatcctggccaagttcaacggcagcaccgagaaggagtacaagacc
tacaaggagaacttcctgaagcgcttccagctgacgcgcctgccgccctacctcatcttc
tgcatcaagcgcttcaccaagaacaacttcttcgtggagaagaaccccaccatcgtcaac
ttccccatcacgaacgtggacctgcgcgagtacctgtccgaggaggtgcaggccgcccac
tcgcacaccacctacgacctcatcgccaacatcgtgcacgatgggaagccctcggagggc
tcctaccgcatccacgtcctgcaccacggcacagggaagtggtacgagctgcaggacctg
caggtgaccgacatcctgccccagatgatcaccctgtccgaggcctacatccagatctgg
aagcgacgcgaggaggacgagacgaaccaacaacaaggagcctga
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