Zonotrichia leucophrys gambelii (white-crowned sparrow): 135457220
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Entry
135457220 CDS
T09958
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03015
mRNA surveillance pathway
zle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135457220 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
135457220 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135457220 (PABPC4)
03041 Spliceosome [BR:
zle03041
]
135457220 (PABPC4)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135457220 (PABPC4)
mRNA cycle factors
Stress granule specific factors
135457220 (PABPC4)
Spliceosome [BR:
zle03041
]
Complex C
Other components
Complex C specific factors
135457220 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RBD_DEAH11
RRM_occluded
RRM_10
RBD_RDR6
DUF6262
POP1_C
Motif
Other DBs
NCBI-GeneID:
135457220
NCBI-ProteinID:
XP_064587720
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All DBs
Position
23:1405445..1420312
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AA seq
629 aa
AA seq
DB search
MNTAASSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEK
HEEANKAVEEMNGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRP
TYYAPNQMTQMRPNPRWQQGGRPQGFQGMPNAMRQSGPRPALRHLAPANAPASRGLPAAA
QRVGVGTAAQNLAPRPPVAAPAPRAVPPYKYASSVRSPHPGVQPLQAPQPAVHVQGQEPL
TASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRS
KVEEAVAVLQAHQAKKEAAQKVGVVAATS
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgaacacggccgccagcagttaccccatggcctcgctgtacgtgggggacctgcacccc
gatatcaccgaggccatgctctacgagaagttcagccccgctggccccgtgctgtccatt
cgggtctgcagggatatgatcacccgccgctccctgggctacgcctacgtcaacttccag
cagcccgcagatgctgagcgggctctcgataccatgaactttgatgtgatcaaagggaaa
cccattcgcatcatgtggtctcagagggacccttccctgaggaagtcgggggttggcaat
gtcttcatcaagaacctggacaaatccattgataacaaggcactttacgacacattctca
gcgtttggaaacattttgtcctgcaaggtggtgtgtgatgagaatggctctaagggctac
gcctttgtgcactttgagacgcaggatgctgcagatagggccatcgagaagatgaacggc
atgctgctcaacgaccgcaaagtatttgttgggagattcaagtctcgtaaagagagggag
gccgagctgggagccaaggcaaaggaattcaccaatgtctatattaaaaactttggggat
gacatggatgatgaaagactaaaggagctctttggcaaatatggtaaaactctgagtgtt
aaagtgatgacagaccccactggaaaatccaaaggctttggctttgtaagctttgaaaag
catgaagaggccaacaaggcagtggaagaaatgaatgggaaggacatcaatgggaaaatg
ctctttgtgggcagagcacagaagaaggctgagcgccaggcagagctgaagagaaggttt
gagcagctgaaacaggagagactcagccggtaccagggtgttaacctgtacattaaaaac
ctagatgacactatagatgatgaaaaactgaggaaggagttctcaccttttgggtcaata
acgagtgccaaggtgatgctggaagatggacggagcaaaggctttggctttgtctgcttt
tcctctccagaggaggccaccaaggctgtgacagagatgaacgggcgcatcgtgggctcc
aagcccctctatgtggctctggcgcagaggaaggaggagaggaaggctcatctcaccaac
cagtacatgcagcgcatcgctggcatgagggccttgcctgccaacaccatcatcaaccag
ttccagcccgctgctggcggctacttcatgcctgctgtgccccaggctcagagcagaccc
acttactatgcacccaaccaaatgacacagatgagacccaacccacgatggcagcaagga
gggagacctcaaggtttccagggaatgcccaatgccatgcgccagtcggggccccggccc
gccctgcgccacctggcccctgccaacgccccggcctcccgcggcctccccgctgctgcc
cagagagttggtgttggcacagcagcacagaatttggctccccgtcctcctgtagctgcc
cctgctcccagggctgtccctccttacaaatacgcctcaagtgtccgcagcccccacccg
ggtgtccaacctctgcaggcacctcagcctgcagtgcatgtgcagggccaggagcccctg
acagcctccatgctggctgctgcccctccccaggagcagaaacagatgctgggagaacgt
ttgttccctctgatccaagctatgcaccccagcctggctgggaagatcacaggaatgctg
ctagagattgacaactccgagctgctgcacatgctggaatccccagagtccctccgctcc
aaggtggaggaggctgtggcagtgctgcaggctcaccaagccaagaaagaagctgcccaa
aaagtgggagtggttgctgctacctcttga
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