Zonotrichia leucophrys gambelii (white-crowned sparrow): 135457652
Help
Entry
135457652 CDS
T09958
Symbol
COPA
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zle04131
]
135457652 (COPA)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zle04147
]
135457652 (COPA)
Membrane trafficking [BR:
zle04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
135457652 (COPA)
Exosome [BR:
zle04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
135457652 (COPA)
Exosomal proteins of bladder cancer cells
135457652 (COPA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
TPR_COPA_B
Beta-prop_EML_2
WDR55
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_SCAP
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
135457652
NCBI-ProteinID:
XP_064588419
LinkDB
All DBs
Position
25:3826632..3878621
Genome browser
AA seq
1186 aa
AA seq
DB search
MLTKFETKSARVKGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRT
TFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQT
VRVWDISGLRKKNLSPGAVESDVRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPSMP
LIVSGADDRQVKIWRMNESKAWEVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDM
SKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMLVFKLERERPALAVHGNSLFYVKD
RFLRQLDFGSSRDVAVMQLRSGSKFPVFSMSYNPAENAVLLCTRASNLENSTYDLYTIPK
DADSQNPDAPEGKRSSGLTAVWVARNRFAVLDRMHSILIKNLKNEITKKVPVPNCDEIFY
AGTGNLLLRDSDSVTLFDVQQKRTLASVKISKVKYVIWSADMSHVALLAKHAILICNRKL
ESLCQIHENIRVKSGAWDESGVFIYTTSNHIKYAVTSGDHGIIRTLDLPIYVTRVKGNNV
YCLDRECRPRVLTIDPTEFRFKLALINRKYDEVLHMVRNAKLVGQSIIAYLQRKGYPEVA
LHFVKDEKTRFSLALECGNIEIALEAAKALDDKSCWEKLGEVALLQGNHQVVEMCYQRTK
NFDRLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDVAERVRILRNCGQKSLA
FLTAATHGLDEEAESLRESFDPEKETIPAVDPEARLLQPPAPVLPLDTNWPLLTVSKGFF
EGSIAGKGKGGALAADIDIDTVGTEGWGEDAELQLDEDGFVDAGEGFGEEGAGKGQEEGG
GWEVEEDLDLPPELDVPAGPAGTAEDGFFVPPTKGTSPAQVWCNNSQLPVDHILAGSFET
AMRLLHDQVGVTNFGPYKQLFLQTFSRGRTTFQALPSLPAMYGFPHRNWKEAGLKNALPA
VGLKLNDLIQRLQLCYQLTTAGKFEEAVEKFRLILLSVPLLVVDNKQEIAEAQQLVAICR
EYIVGLSMEIERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNF
KSAATFARRLLELGPKPEVAQQTRKILAACEKNPIDSHQLNYDQHNPFDICAASYRPIYR
GKAVEKCPLSGACYSPEFRGQICRVTTVTEIGKDVLGLRISPLQFR
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgttgaccaaattcgagaccaaatccgcgcgggtgaaaggcccggtgcgaggcatcgac
ttccacaagcagcagccgctcttcgtgtccgggggggacgattacaaaatcaaggtgtgg
aattacaaactgcggcgctgcctcttcaccctgctgggccacctggattacatccgcacc
accttcttccaccacgaatatccgtggatcctgagcgcctccgacgaccaaaccatccgg
gtgtggaactggcagagccgcacctgcgtctgcgtgctgacggggcacaaccactacgtg
atgtgcgctcagttccaccccagcgaggacctggtggtgtcggccagcctggaccagact
gtgagggtgtgggacatttctgggctgcgcaagaagaacctttcccccggcgctgtggag
tcggacgtgcgcggcatcaccggcgtcgacctgttcggcaccaccgacgccgtcgtcaaa
cacgtgctcgagggccatgaccgtggagtgaactgggccgccttccacccgtccatgccc
ctcatcgtgtccggggccgacgaccgccaggtcaagatctggaggatgaacgaatccaag
gcctgggaggtggacacgtgccggggccactacaacaacgtttcctgcgccgttttccac
ccgcgccaggagctgatcctgagcaactccgaggacaagagcatccgcgtctgggacatg
tccaagcggaccggggtccaaacgttccggcgcgaccacgaccggttctgggtgctggcg
gcgcatcccaacctcaacctgttcgctgccgggcacgacgggggcatgctggtgttcaag
ctggagcgcgagcggccggcgctggccgtgcacgggaattctctgttctacgtcaaggat
cggttcctgcgccagctcgacttcggcagctcccgcgacgtcgccgtcatgcagctgcgc
agcggctccaagttcccggttttcagcatgagctacaacccagctgagaacgccgtcctg
ctctgcacccgagccagcaacctggagaacagcacctacgacctttacaccattcccaag
gatgcagattcccaaaatcccgacgctccggaggggaagcgctcctcggggctcacggcc
gtgtgggtggcgcggaaccgattcgccgtcctggacaggatgcactcgatcctgatcaag
aacctgaagaacgagatcaccaagaaggttccggttcccaactgcgacgagattttctac
gcgggcaccgggaacctgctcctgcgggactccgactccgtcacgctcttcgacgtccag
cagaaaaggactttggcctcggtgaagatctccaaggtgaagtacgtgatctggtcggcc
gacatgtcccacgtggcgctgctggccaagcacgccatcctgatctgtaaccggaagctg
gagtcgctgtgccagatccacgagaacatccgggtcaagagcggcgcctgggacgagagc
ggcgtcttcatctacaccaccagcaaccacatcaaatacgccgtcacctcgggggaccac
ggcatcatccgcacgctggacctgcccatctacgtcacgcgcgtcaagggcaacaacgtt
tactgcctggaccgcgagtgccggccccgcgtgctcaccatcgaccccaccgagttccgc
ttcaaactcgccctcatcaaccggaaatacgacgaggtgctgcacatggtgcgcaacgcc
aagctggtggggcagtccatcatcgcctacctgcagcgcaagggctaccccgaggtggcg
ctgcacttcgtcaaggacgagaaaacgcgcttcagcctggccctggagtgcggcaacatc
gagatcgccctggaggcagccaaggccctggacgacaagagctgctgggagaagctcggg
gaggtggcgctgctgcaggggaaccaccaggtggtggagatgtgctaccagcgcaccaag
aacttcgaccgcctctccttcctctacctcatcaccggcaacctggagaagctgcgcaag
atgatgaagatcgcggagatccggaaggacatgagcgggcactaccagaacgcgctgtac
ctgggggacgtggccgagagggtgcggatcctgcggaactgcggccagaagtccctggcg
ttcctgacggccgccacgcacgggctggacgaggaggccgagagcctgcgggaatccttt
gatcccgagaaggagacgatcccggccgtggatcccgaggcgcggctgctgcagccgccg
gcgccggtgctgcccctggacaccaactggccgctgctgaccgtgtccaagggcttcttc
gagggctccatcgccgggaaagggaaaggaggagccctggccgccgacatcgacatcgac
accgtgggcaccgagggctggggcgaggacgccgagctgcagctggatgaagacggattc
gtggatgccggggaaggattcggagaggaaggagcgggaaaagggcaggaggaaggagga
ggatgggaggtggaggaagatttggatcttccccccgagctggatgtccccgccggcccc
gcaggaacggctgaggacggattctttgtgcctcccaccaaaggcaccagcccagcccag
gtgtggtgcaacaattcccagctccccgtggatcacatcctggcgggatccttcgagaca
gccatgaggctgctccacgaccaggtgggggtgaccaacttcgggccctacaagcagctt
ttcctgcagaccttctcccggggcaggacgacgttccaggcgctccccagcctccccgcc
atgtacggattcccgcaccgcaactggaaggaggccgggctgaagaacgcgctgccggcc
gtggggctgaagctgaacgatctgatccagcggctgcagctctgctaccagctcaccacg
gccggcaagttcgaggaggccgtggagaaattccggctgatcctgctcagcgtgcccctg
ctggtggtggacaacaagcaggagatcgccgaggcgcagcagctggtcgccatttgccgg
gaatacatcgtggggttgtccatggagatcgagaggaagaaactgcccaaggagacgctg
gagcagcagaagagaatctgtgagatggccgcctacttcacgcactccaacctgcagccc
gtgcacatgatcctggtgctccgcaccgccctcaacctcttcttcaagctcaagaacttc
aaaagcgccgccaccttcgcccggcgcctgctcgagctcggccccaagcccgaggtggcc
cagcagacgcggaagatcctggcggcgtgcgagaagaaccccatcgacagccaccagctc
aactacgaccagcacaaccccttcgacatctgcgccgcctcctaccgccccatctaccgc
ggcaaggccgtggagaagtgtcccctcagcggggcctgctacagccccgagttccgggga
cagatctgccgcgtcaccacggtgacggagatcgggaaggacgtgctggggctgcgcatc
agcccgctccagttccgctag
DBGET
integrated database retrieval system
