Zonotrichia leucophrys gambelii (white-crowned sparrow): 135457751
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Entry
135457751 CDS
T09958
Name
(RefSeq) DENN domain-containing protein 4B-like
KO
K20163
DENN domain-containing protein 4
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zle04131
]
135457751
Membrane trafficking [BR:
zle04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
135457751
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
PPR_3
PPR_long
PPR
DUF2464
Motif
Other DBs
NCBI-GeneID:
135457751
NCBI-ProteinID:
XP_064588550
LinkDB
All DBs
Position
25:2817611..2841208
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AA seq
1451 aa
AA seq
DB search
MSDEKPPQLVDYFVVAGLAEGSRALEEEQQPRPARPGEPITDVAVIIRSQGEEVPQGFTC
IETSTSGHPVDLNAGLLNNPQMFLCYKRGRDKPPLIELGVHYEGKDRPKPGCQLLDTTPY
SRSANLAAGSPGHQRTFLTFRRAAEPPGHHTLGVTDICLVMPSKGESTPHTFCRVDKNLN
TSMWGPALFLCYKIAVAKDNTLVYEAGLLSRYPEQDSESFPLPESVPVFCLPMGATIESW
PVGTKYPLPVFSTFVLTGASGDKVYGAAIQFHEAFPRERLSEAQALRLGLLSVVDRRPVP
GRSLHTRKSICVLSHWPFFDVFRKFLMFIYRYSISGPHVLPLETHISHFMHNVPFPSPQR
PRILVQMSPYDSLLLCRPVSSPLPLSGASFLTLLQNLGPDNAVALLVAVLTEQKLLIHSL
RPDVLTSVGEALVAMIFPLRWQCPYIPLCPLALADVLCAPVPFIVGIHSSYFDLYEPPRD
VIFVDLDTNTIFQSEERKLLSPRALPRKPCKVLLASLHSLSQQLDELLSAPGEEEPPELV
LSDAEAAGARRAQLELEARAAFLRFMACALRGYRSFLRPIAPAPAPAGRDAGSLFALQGF
LRSRDRAYQRFYGQLLRTQLFTQFIEDCSFASDREPCLEFFDTCVDKVQVDLEKPEDTPL
MELDDPRGGEHTVFITPPEQPAGPDGAEPPARYRYDGFPTLRPELLEPPRDPLVAQLCQA
RSSAPSSPAPRRTKQEMKVAQRVAQKSSAVPELWARCLLGHCYGLWFLYLPTQVRAAPAK
LRALQLAYDVLRKMEQHKVVLPDEVCYRILMQLCGQYGEPVLSVRVLLEMKRAGIVPNTV
TYGYYNKAVLESKWPAGTQGGRLRWAKLRNVVLGAAQFRQPLRQRQRQRAAGDPPGDRAA
AAPRPPLHRQTTWAGRSLRDPVPAPRLVKSGSLSFPARSEGGAAREGPGEPPLLPVTPTP
PPARRPPGSADGSLSDIATDDSGGDEGPGGGPGGGPGGPGGVTPRRGLAAKLQQLLSPGK
RPPRPAEPPRHPGGRRGSEQRDGDPPPPPQSRRSPGGTLLRPRERPESTASESSVSLGSE
LDLSDASGGSGGAPKAPGEPCTDGGAGTEPPGLEVLLSSCSRCPGCAALVFDEELMAGWT
SDDSNLNTSCPFCCRSFVPFLSIEIRDLRRAPSPPPVPPSPQGPVLSDRRRCLELDGTPE
TPGTPGLCNGCAETPPPWRRERVAFAYLCPLVLRKELESLVENEGAELLARPELVDKHPI
IFWNLLWFFQRLALPSQLPLLLLGSQHAPPDPQPPEPSRVRVRLLWDVLSPDPESCPPLY
VIWRLHSSIPPRLQPWGPPARPFSLPFLEALLGHVGLNEVHKAIGLFLETLADPGAPQTL
HRGIYRELLFLTLAALGREHTDIAAFDRRYRSALAKLGGAPGRDELRRRRAQPPSARASE
CRRCFGAPPEC
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgagaagcccccgcagctcgtggattatttcgtggtggccgggctggccgag
ggctcgcgggcgctggaggaggagcagcagccgcggccggcgcggcccggggagcccatc
acggacgtggccgtgatcatccgctcgcagggcgaggaggtgccgcagggcttcacctgc
atcgagaccagcacgtccggacaccccgtggacctcaacgcggggctgctcaacaacccc
cagatgttcctgtgctacaaacggggccgggacaaaccccccctgatcgagctgggggtg
cactatgagggcaaggaccggcccaagccgggctgccagctcctggacacgacgccctac
agccgctctgccaacctggccgcgggctcgccgggccaccagcgcacgttcctgacgttc
cggcgcgcggccgagccgcccgggcaccacacgctgggcgtcaccgacatctgcctggtg
atgcccagcaagggcgagagcacgccgcacaccttctgccgcgtggacaagaacctcaac
accagcatgtggggccccgcgctgttcctgtgctacaagatcgccgtggccaaggacaac
acgctggtctacgaggcagggctgctgagccgctaccccgagcaggacagcgagtccttc
cctctgcccgagtcggtgcccgtgttctgcctgcccatgggcgccaccatcgagagctgg
cccgtgggcaccaagtaccccctgcccgtcttctccaccttcgtcctcaccggcgcctcg
ggggacaaggtgtacggcgccgccatccagttccacgaggcgtttccccgggagcggctg
tcggaggcgcaggcgctgcgcctggggctgctcagcgtggtggaccggcggccggtgccg
gggcgctcgctgcacacgcgcaagagcatctgcgtgctgtcccactggcccttcttcgac
gtcttccgcaagttcctcatgttcatctaccgctactccatctcgggcccccacgtgctg
cccctggagacgcacatctcgcacttcatgcacaacgtgcccttcccgtccccgcagcgc
ccgcgcatcctggtgcagatgtccccctatgacagcctgctgctgtgccggcccgtgtcc
tccccgctgcccctcagcggggccagtttcctgacgctgctgcagaacctgggccctgac
aacgccgtggcgctgctggtggccgtcctcaccgagcagaagctgctcatccactcgctg
cgccccgacgtcctgaccagcgtgggggaagccctggtggcgatgatcttccccctgcgc
tggcagtgcccctacatcccgctgtgcccgctggcgctggctgacgtgctgtgtgccccc
gtgcccttcattgtaggcatccactccagctacttcgacctctacgagcccccccgcgac
gtcatcttcgtcgacctggacaccaacaccattttccagagcgaggagaggaagctgctg
tcgccccgcgcgctgccccgcaagccctgcaaggtgctgctggcctcgctgcacagcctg
tcccagcagctggatgagctgctgagcgcgccgggcgaggaggagcccccggagctggtt
ctgagcgatgcggaggctgcgggggcgcggcgggcgcagctggagctggaggcgcgggcg
gcgttcctgcgcttcatggcctgtgccctgcgcgggtaccgctccttcctgcggcccatc
gcgcccgcgcccgccccggccggccgtgacgccggcagcctgttcgccctgcaggggttc
ctgcgctcccgggatcgggcctaccagcgtttctacgggcagctgctgcgcacgcagctc
ttcacgcagttcatcgaggactgctccttcgccagcgaccgcgagccctgcctcgagttc
ttcgacacctgcgtcgacaaggtgcaggtggacctggagaagcccgaggacacgcccctg
atggagctggacgacccccggggtggggagcacacggtgttcatcacccccccggagcag
ccggcggggcccgacggggctgagccccccgcccgctacaggtatgacgggttccccacg
ctgcgcccggagctgctggagcccccccgggaccctctggtggctcagctgtgccaggcc
aggagcagcgccccgagcagccccgccccgcggcgcaccaagcaggagatgaaggtggcc
cagcgcgtggcacagaagtcgtcggcggtgcccgagctgtgggcacggtgcctgctgggg
cactgctacgggctctggttcctgtacctgcccacgcaggtgcgcgctgcccccgccaag
ctgcgggcgctgcagctggcgtacgacgtgctgcgcaagatggagcagcacaaggtggtg
ctgcccgacgaggtgtgctaccgcatcctgatgcagctgtgcgggcagtacggcgagccc
gtgctgtccgtgcgcgtcctgctggagatgaagcgcgccggcatcgtgcccaacaccgtc
acctacggctactacaacaaggcggtgctggagagcaaatggccggcggggacgcagggg
gggcggctgcgctgggccaagctcaggaacgtggtgctgggggcggcgcagttccggcag
cccctgaggcagcggcagcggcagcgagcggccggagacccccccggtgaccgcgccgcc
gccgccccgcgcccccccctgcaccgccagaccacctgggccggccggagcctccgggac
ccggtgccggccccgcggctcgtcaagagcggcagcctcagtttccccgcccgcagcgag
gggggcgcggcccgggaggggccgggggagccccccctgctcccggtgacccccaccccg
ccccccgcccgccgcccccccggttcggccgacgggagcctctcggacatcgccaccgac
gacagcggcggcgacgaggggcccggggggggtcccggggggggtcccggtggtcccggg
ggggtgaccccgcgccggggcctggcggccaagctgcagcagctgctgtcccccgggaag
cgccccccgcggcccgcggagcccccccggcatcccgggggtcgtcgggggtcggagcag
cgggacggggacccccccccacccccccaatcacggcgcagccccggcgggaccctgctg
cggccccgggagcggcccgagtccacggcctccgagagctcggtgtcgctgggcagcgag
ctggacctgtccgatgcctcggggggcagcgggggcgcccccaaagcccccggggagccc
tgcacggatgggggggcgggcacggagccccccggcctggaggtgctgctgtcgagctgc
tcgcgctgcccgggctgcgccgcgctcgtgttcgatgaggagctcatggccggctggacc
tcggacgactccaacctcaacacctcgtgccccttctgctgccgctccttcgtgcccttc
ctgagcatcgagatccgcgacctccgccgggcgcccagcccccccccggtgcccccctcc
cctcaggggccggtgctgagcgaccgccggcgctgcctggagctggacgggacccccgag
acccccgggacccccgggctgtgcaacggctgcgccgagaccccgcccccctggcgccgg
gagcgcgtggccttcgcctacctgtgcccgctggtgctgcgcaaggagctcgagagcctg
gtggagaacgagggcgcggagctgctggcgcgccccgagctggtggacaagcaccccatc
atcttctggaaccttctgtggttcttccagcgcctggcgctgcccagccagctgcccctg
ctgctgctgggctcgcagcacgcaccccccgacccacagccccccgagccgtcgcgggtc
cgggtgaggctcctgtgggatgtgctgagccccgaccccgagagctgccccccgctctac
gtgatctggaggctgcacagtagcatccccccccggctgcagccctggggccccccggcc
cgcccgttctcgctgcccttcctggaggccctgctgggccacgtggggctcaacgaggtg
cacaaagccatcgggctcttcctggagaccctggcggaccccggggccccccagaccctg
cacaggggcatttaccgggagctgctcttcctgacgctggcggcgctgggccgggagcac
acggacatcgccgcctttgaccgccggtaccgttcggcgctggccaagctgggcggggcc
ccgggccgggacgagctgcggcggcggcgggcgcagcccccgagtgcgcgagcgagcgag
tgccgccggtgcttcggggcgccccccgagtgctga
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