Zonotrichia leucophrys gambelii (white-crowned sparrow): 135458161
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Entry
135458161 CDS
T09958
Symbol
SOX13
Name
(RefSeq) transcription factor SOX-13 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zle03000
]
135458161 (SOX13)
Transcription factors [BR:
zle03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
135458161 (SOX13)
BRITE hierarchy
Motif
Pfam:
HMG_box
HMG_box_2
CREPT
AAA_23
Motif
Other DBs
NCBI-GeneID:
135458161
NCBI-ProteinID:
XP_064589205
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All DBs
Position
26:2710795..2754745
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AA seq
611 aa
AA seq
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MSMRSPISPPPELDGAGTMVNCAVKTEEKKEGSPETPPGAAPSADPRPQDPPGPPPKDGT
DPQALPQESRSPSGDVPEPRRSAFEPAGSGQEKLDFNRNLKEVMPTIEKLLASDWKERLL
GRNAAESKEVKGTQESLAEKELQLLVMINQLSTLRDQLLTAHSEQKNMATMLFEKQQQQM
ELARQQQEQIAKQQQQLIQQQHKINLLQQQIQQVNMPYVMIPAFTPGHQPLPVTPESQLA
LPIQPIPCKPVDYPVQLLHSPPPATLKRPAGPGHLQMQETSQPLNLTAKPKGSELPSASS
SPSLKMSGCQALPPSHGASRELQSSPSNLPLGFLGEGDAITKAIHDARQLLHGHGAAMEG
SLSSPYRKEPVGIDSSPVKERMEETPGHRLDEALLSCEMDGSRHFPESRNNNHIKRPMNA
FMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMSNQEKQPYYEEQARLSRQHLEKYPD
YKYKPRPKRTCIVEGKRLRVGEYKALMRNRRQDARQGYLIGPQGSQVPPSSSDVLYPRPV
GVQLPPPLLEHYLPRGVDPTMPVIVNTRSLKDGDAGDDGHSVPEGDMYRYSEDEDSEGED
KSDGELVVLTD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgaggagccccatctctccacccccggagctggatggagcgggcaccatggtg
aactgcgccgtcaagaccgaggagaagaaggagggcagccctgaaacccccccgggggct
gcccccagcgctgacccccggccccaggaccccccagggccccctcccaaggatggcacc
gacccccaggccctgccacaggaatcccgctctccctccggggatgtccccgagccccgg
cgctccgccttcgagccggccgggagcggccaggagaagctggacttcaacaggaacctg
aaggaagtgatgccaaccatcgagaagctgctggccagtgactggaaggagcggctgctg
ggccggaacgcggctgaatccaaggaagtgaaaggaacgcaggagagcctggcagagaag
gagctgcagctgctggtgatgatcaaccagctgtccacgctgcgggaccagctgctgacg
gcgcactcggagcagaagaacatggccaccatgctcttcgagaagcagcagcagcagatg
gagctggcacggcagcagcaggagcagatcgccaagcagcagcagcagctcatccagcag
cagcacaagatcaacctcctccagcagcagatccagcaggtcaacatgccctacgtgatg
atccccgccttcacccccggccaccagcccctgccggtgacgcccgagtcccagctggca
ctgcccatccagcccatcccctgcaaaccggtggattacccggtgcagctcctgcacagc
ccccctcctgccacgctcaagagacccgcgggcccgggacacctccagatgcaggagacc
tcgcagccgctgaacctgacggccaagcccaagggctcggagctgcccagcgcctccagc
tctcccagtttgaagatgagcggctgccaggcgctgccgccgagccacggggccagcagg
gagctgcagagcagcccctccaacctcccgctgggattcctgggagagggcgatgccatc
accaaagccatccacgacgcgcggcagctgctgcacggccacggcgccgccatggagggg
tcactgagcagcccctaccgcaaggagcccgtcgggatcgactcctccccggtgaaggag
cggatggaggagacccccggccaccggctggacgaggctctgctgagctgcgagatggac
ggctcccggcacttcccggagtccaggaacaacaaccacatcaagcggcccatgaacgcc
ttcatggtgtgggccaaggacgagcgcaggaagatcctgcaggccttcccagacatgcac
aactccagcatcagcaagatcctgggatcccgctggaaatccatgtccaaccaggagaag
cagccctactacgaggagcaggcgcggctgagccggcagcacctggagaagtacccggac
tacaaatacaaaccgcggcccaagcgcacctgcatcgtggagggcaagcggctgcgcgtg
ggcgagtacaaggcgctgatgaggaaccggcgccaggacgccaggcagggctacttgata
gggccgcagggcagccaggtgccccccagctcctcggacgtgctgtacccgcggccggtg
ggcgtccagctgcccccgcccctgctggagcattacctgccccgcggcgtggaccccacc
atgcccgtcatcgtcaacacccgcagcctcaaggacggcgacgccggggacgacgggcac
tcggtgcccgagggggacatgtaccgctacagcgaggacgaggactcggagggcgaggac
aagagcgacggcgagctggtggtgctgacggactga
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