Zonotrichia leucophrys gambelii (white-crowned sparrow): 135458279
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Entry
135458279 CDS
T09958
Symbol
HDAC5
Name
(RefSeq) histone deacetylase 5 isoform X1
KO
K11406
histone deacetylase 4/5 [EC:
3.5.1.98
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
135458279 (HDAC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
zle03036
]
135458279 (HDAC5)
Enzymes [BR:
zle01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
135458279 (HDAC5)
Chromosome and associated proteins [BR:
zle03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
135458279 (HDAC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
HDAC4_Gln
Motif
Other DBs
NCBI-GeneID:
135458279
NCBI-ProteinID:
XP_064589415
LinkDB
All DBs
Position
27:5058670..5077945
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AA seq
1133 aa
AA seq
DB search
MLLSGRAGPRGEDGGGGGGAAGRAPGGTGGTPGLPGGAGTAPVPRPALTDTRLCEPPRHP
RATMDPQSDAEGGSSREPPLELLPRVPLHAALPAPACPAGPEGPEGPGPEAGVDAGLAAA
REQQLQRELVALKQQQQLQKQLLFAEFQKQHEHLTRQHQVQLQKHLKQQQEALAARRQQE
LEQQRQRERQELEQQRLEQLQSLRPKERGRDSAIASTEVKLKLQEFLLSKTKEPGPGPPN
HSLPQHPKCWAHHTSLDQSSPPQTGSPGTPPSYKLPLLGTYDGRDDFPLRKTASEPNLKV
RSRLKQKVAERRSSPLLRRRDGSVLSAFRKRHVEITVSSVCSSAPGSGPSSPNSSHGAHN
GLAASVPNIHSEQLLPQPRALALDGAQLSLYTSPSLPNLSLGLQATVTVTSAHLPVSPKL
SPQAEGERPGVPPGVSPLRPGAALTGKFLSTSSIPGCLLGVALDGGDTPSGSPSLLQHVL
LLEQARQQSTLIAVPLHGQSPLVAAERAGAARGGGSKLPRHRPLSRTQSSPLPQSPQALP
HGPLQQHFLDKQQLQLAKLLPKGAELARQPPTHPEETEEELTEQQSPPPGDRGPPGPPLG
PPIALVSPEAGDPPEQPQEPQGCQEPGDSGDEAPGDPDVTELGVTYKQVYPEAPLQLFPA
PPLGVLALPHAALARTQSSPASVKPPQPEGPPKHLFTTGVVYDTFMLKHQCTCGNTTIHP
EHAGRIQSIWSRLQETGLLGKCERIRGRKATLEEIQTVHSEHHALLYGTSPLNRQKLDSK
KLLGPITPKTYAVLPCGGIGVDSDTVWNELHSSSAVRTAVGCLLELAFKVAAGEVKNGFA
VIRPPGHHAEESTAMGFCFFNSVAISAKLLQQRLSVGRILIVDWDIHHGNGTQQAFYSDP
HVLYISLHRYDDGNFFPGSGAPEEVGSGLGVGYNINIAWTGGVDPPIGDVEYLTAFRTVV
MPIAKEFSPDLVLVSAGFDAVEGHLSPLGGYSVTAKCFGHLTKQLMMLAGGRVVLALEGG
HDLTAICDASEACVTALLGLELEPLDPALLQQKPNVNAVATLEKVIEIQSRHWGSVRRFA
AAVGRSLLEAQRGDTEEAETVTAMALLSVGAEHGRTEPQARPAEEPMEAEPTL
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgttgttgtcggggcgggcggggccgcgcggcgaagatggaggaggaggcgggggggcg
gcggggcgcgcgccgggcggcaccggggggaccccagggctcccgggcggcgcgggcaca
gccccggtgccccggccggcgctgacggacacgcggctctgcgagcccccccggcacccg
cgggccaccatggacccccagagcgacgcagagggggggtccagccgtgagcccccgctg
gagctgctgccccgtgtccccctgcacgctgccctgcccgccccagcgtgtccggcaggg
ccggaggggccggaggggccggggcccgaggcgggggtggacgcggggctggcggcggcg
cgggagcagcagctgcagcgggagctggtggccctgaagcagcagcagcagctccagaag
cagctgctcttcgccgagttccagaagcagcacgagcacctcacccgccagcaccaggtg
cagctccagaagcacctcaagcagcagcaggaggccctggcagcccggcggcagcaggag
ctggagcagcagcggcagcgggagcggcaggagctggagcagcagcgcctggagcagctg
cagagcctgcgccccaaggagcggggcagggacagcgccattgccagcacggaggtgaag
ctgaagctccaggaattcctgctcagcaagacgaaggagccgggccccggcccccccaac
cattccctcccccagcaccccaaatgttgggctcaccacacctcgttggaccagagttcc
cccccccagaccggcagcccggggacccccccgtcctacaagctccccctcctcggcacc
tacgacggccgggacgatttcccgctccgcaaaaccgcgtccgagcccaacctgaaggtg
cgctcgcggctgaagcagaaggtggcggagcggaggagcagccccctcctgcggcgccgc
gacggctccgtgctcagcgccttccgcaagcgccacgtggagatcaccgtgtcgtcagtc
tgcagcagcgcccccgggtcggggcccagctcccccaacagctcccacggtgcccacaac
ggcctggccgcctctgtccccaacatccacagcgagcagctcctgccccagccccgcgcc
ctggccctggacggggcccagctcagcctctacacgtccccatcgctgcccaacctgtcc
ctggggctgcaggccactgtcaccgtcaccagcgcccacctccccgtgtcccccaagctg
tcgccgcaggcggagggcgagcggccgggggtgcccccgggggtgtccccgctgcgcccc
ggggccgccctcaccgggaagttcctgagcacgtcctcgatcccgggctgcctgctgggg
gtggccctggatgggggggacacccccagcgggtccccgtccctgctgcagcacgtgctg
ctgctggagcaggcgcggcagcagagcaccctcattgctgtgcccctgcacgggcagtcc
ccgctggtggcggcagagcgggccggggctgcccgcggggggggcagcaagctgccgcgg
caccggcccctgagccgcacgcagtcctcgcccctgccccagagcccccaggcgctgccc
cacgggcccctccagcagcacttcctggacaagcagcagctccagctggccaagctgctc
cccaagggggcggagctggcacggcagccccccacgcaccccgaggagacggaggaggag
ctgacggagcagcaatcgccccccccgggggacaggggcccccccggcccccccctcggc
ccccccatcgccctggtgtccccagaggccggggaccccccggagcagccccaggagccc
cagggctgccaggagccgggggacagcggggacgaggcccctggggaccccgacgtcacc
gagctgggggtcacctacaagcaggtgtaccccgaggcgccgctgcagctcttccccgcg
ccccccctgggggtcctggctctgccccacgccgccctcgcccgcacacaatcgtccccg
gccagcgtgaaacctccccagcccgaggggccccccaagcacctcttcaccacaggtgtg
gtgtacgacacgttcatgctgaagcaccagtgcacctgcggcaacaccaccatccacccc
gagcacgccggccgcatccagagcatctggtcccggctgcaggagacggggctgctgggc
aagtgtgagcggatccggggcaggaaggcgacgctggaggagatccagacggtgcactcg
gagcaccacgcgctgctctacggcaccagcccgctgaaccgccagaaactggacagcaaa
aagctgctgggtcccatcactccgaagacgtacgcggtgctgccgtgcgggggcattggg
gtggacagtgacacggtgtggaacgagctgcactcgtccagcgccgtgcgcacggccgtg
ggctgcctgctcgagctggccttcaaggtggccgcaggggaggtcaagaacggcttcgct
gtcatccgccccccaggccaccacgccgaggagtccacggccatgggcttttgcttcttc
aactccgtggccatctcagccaagctgctgcagcagcgactcagcgtgggcaggatcctc
atcgtggactgggacatccaccacggcaacgggacccagcaggctttctacagcgacccg
cacgtgctctacatctccctgcaccgctacgacgacggcaacttcttcccgggcagcggc
gcccccgaggaggtgggcagcgggctgggcgtgggctacaacatcaacatcgcctggacc
ggcggcgtggaccccccgatcggggacgtggagtacctgacggccttcaggacggtggtg
atgcccattgccaaggagttctccccggacctggtgctggtctccgccggcttcgacgcc
gtcgagggccacctgtcccctctcggtggctactccgtcaccgccaagtgttttgggcac
ctgaccaagcagctgatgatgctggcgggcggccgggtggtgctggcgctggaggggggg
cacgacctgacggccatctgcgacgcctccgaggcctgtgtcaccgccctgctgggcctc
gagctggagcccctggacccggccctgctgcagcagaagcccaacgtgaacgcggtggcc
acgctggagaaggtcatcgagatccagagccggcactggggctctgtccggcgctttgcc
gccgccgtgggccggtccctgctggaggcgcagcgcggggacaccgaggaggccgagacg
gtgacagccatggccctgctgtccgtgggggctgagcacggcaggacggagccacaggcc
aggccagcagaggagcccatggaggccgagcccacgctctga
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