Zonotrichia leucophrys gambelii (white-crowned sparrow): 135458466
Help
Entry
135458466 CDS
T09958
Symbol
CASC3
Name
(RefSeq) LOW QUALITY PROTEIN: protein CASC3
KO
K14323
protein CASC3
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03013
Nucleocytoplasmic transport
zle03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135458466 (CASC3)
03015 mRNA surveillance pathway
135458466 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135458466 (CASC3)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
135458466 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
135458466
NCBI-ProteinID:
XP_064589705
LinkDB
All DBs
Position
27:complement(3820291..3832537)
Genome browser
AA seq
719 aa
AA seq
DB search
MADRRRQRASQDSEDSEGSAASDSAGSAPXSPRSARSRSASGSRSRSRSGSPRLSHRPPR
GAAGALGAGPRGRRLERMGPAXRCAAESECESEDGIEGDAVLSDYESAEDSEAEEEDYSE
EESSKVELKQDSNDSCESAARGEKGSEKVDAKGAVTGERQSGDGQESTEPVEKKVGKKVP
KHLDDDEDRKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDE
QAPKTRQELIALYGYDIRSAHNPDDIKPRRMRKPRFGSPPQRDPNWSNERPPKPPRHQGA
KSPSAPPRSYNSRSAGRMPNARNYPRMGGYKDTRPGYRASEAPVLHRNGEQAKQEGGYRG
KHAEQSPSRDTSPELEVGHVHGSPGKEEGALENQATGADAVQPPPDRPVEKKSYSRARRT
RVKAGEAGKLAEEVPASEGLAPVIPKATPAESSPTAAKSNWESPVESSVDGLEQEMTQMN
LTEQNWSPGQSQFIPPRELRGIPNHVHVGTGPAPQFNRMEEMAVPGGRVKRYSSQRQRPP
VPEPAPPMHISIVEGHYYDPLQFQGPIYAHGENPAPLPPQGMIVQPEMHLPHPGLHPHQT
PPAMANPGLYPPAVSMPPGQPPPQQLLTPTYFSAPGVMNFGNPGYPYPPGALPPPPPPHL
YSNTQAQSQVYGGVTYYNTVQQQVQPKPSPPRRTSQPVTIKPPPPEDSKGEKSKERSNT
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggcagcgcgcctcgcaggacagcgaggacagcgagggctcggcg
gcctccgacagcgccggctccgctccgngttccccgcgctcggcccgttcccgctcggca
tccggatcccgctcccgttcccggtccggctcgccccggttgtctcaccgcccgccgcgc
ggcgccgcgggggccctcggggctgggccgcggggtcgccggctcgagcgcatggggccg
gcgnngagatgcgcggccgagtcggagtgtgaaagtgaggatggcattgaaggagatgcc
gtgctctctgactacgaaagcgccgaggactcggaggcagaggaagaggattacagcgag
gaagaaagctccaaggtggagctgaagcaggacagcaacgattcctgcgagtcagcagcc
agaggagagaagggcagtgagaaggtggatgccaagggagcggtgacgggcgagcggcag
agcggggacgggcaggagagcaccgagcctgtggagaagaaggttgggaagaaggttccc
aagcacctggatgacgatgaggatcgcaagaacccggcgtacatcccgcgcaaggggctc
ttctttgagcacgacctccgagggcagacgcaggaggaggaggtcaggcccaagggtcgt
cagcggaagctgtggaaggacgaggggcgctgggaacacgacaagttccgtgaggatgag
caggcccccaagaccaggcaggagctgattgctctgtatgggtacgacatccgctcagcc
cacaaccccgacgacatcaaaccccgcaggatgcgcaagccacgctttggcagtccccct
cagcgagaccccaactggtccaacgagaggccccccaagcccccgaggcaccagggtgcc
aagagcccctcggctcccccacgctcctacaacagccgcagcgctggcaggatgcccaat
gccaggaactaccccaggatggggggctacaaggacacacgtccaggctaccgagcctca
gaggcccctgtgctgcacaggaacggggaacaagccaagcaggagggtggctaccgtggg
aagcacgcagagcagagcccatcgagggacacgtcccctgagttggaggtgggacacgtc
catggcagccctgggaaggaggagggagctctggaaaaccaagccacgggtgctgatgct
gtgcagccaccaccggacagaccagtggagaagaaatcttattcccgggcaagaaggacc
agagtcaaggctggggaggcagggaagctggcagaggaggtgcctgcttctgaggggctg
gctcctgtgattccaaaagccacgccagctgagagctcccccacagcagccaagagcaac
tgggagtcaccagtggaatccagcgtggatggacttgagcaggagatgacccaaatgaac
ctgacagagcagaactggagcccggggcagtcccagttcatccctccccgggagctgagg
ggtattcccaaccatgtgcacgtgggaactgggccagcgccgcagtttaaccggatggag
gagatggcagtgccaggggggcgtgtgaagcgctactcatcgcagagacagagacccccc
gtgccggagcctgcgccccccatgcacatcagcatcgtggaagggcactactacgaccca
ctacaattccagggaccaatctacgcccacggtgagaacccagccccgctgccgccccaa
gggatgattgtgcagccggagatgcacctccctcatccaggtttacacccccaccagacg
cccccagccatggcaaaccccggcctgtaccccccagcagtgtccatgcccccggggcag
cccccgccgcagcagctgctcactccgacttacttctctgcccctggagtgatgaatttc
ggcaatcctggctacccctacccccctggagctctgccccctccgccccctcctcatctc
tattccaacactcaggcgcagtcccaggtctatgggggggtcacctactacaacactgtc
cagcagcaggtccagcccaagccctccccgccccgccggacgtcccagcctgtgaccatc
aagccaccccctccagaggacagcaaaggtgaaaaatcaaaggagaggagcaacacgtag
DBGET
integrated database retrieval system
