KEGG   Zonotrichia leucophrys gambelii (white-crowned sparrow): 135458802
Entry
135458802         CDS       T09958                                 
Symbol
LSM4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
zle  Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03018  RNA degradation
zle03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zle00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    135458802 (LSM4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    135458802 (LSM4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zle03019]
    135458802 (LSM4)
   03041 Spliceosome [BR:zle03041]
    135458802 (LSM4)
Messenger RNA biogenesis [BR:zle03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     135458802 (LSM4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     135458802 (LSM4)
Spliceosome [BR:zle03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    135458802 (LSM4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 135458802
NCBI-ProteinID: XP_064590219
LinkDB
Position
28:complement(5409848..5421805)
AA seq 138 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQQKQQKGRGVGGAGRGVFGGRGRGIP
GSGRGQQEKKPGRQSAKQ
NT seq 417 nt   +upstreamnt  +downstreamnt
atgctgcccctgtccttgctgaagacggcgcagaaccaccccatgctggtggagctgaag
aacggggagacgtacaacgggcacctggtgagctgcgacaactggatgaacatcaacctg
cgggaggtgatctgcacatcgcgggacggggacaagttctggaggatgcccgagtgctac
atccgcggcagcaccatcaagtacctgcggatccccgacgaaatcatcgacatggtcaag
gaggaggtggtgtccaagggccggggccgcgggggcatgcagcagcagaagcagcagaag
ggccgtggggtcggaggagctgggcgaggtgtttttgggggccgtggccgaggaattcca
ggcagtgggagaggccagcaggagaagaagccgggcaggcaatcggccaagcagtga

DBGET integrated database retrieval system