Zonotrichia leucophrys gambelii (white-crowned sparrow): 135458921
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Entry
135458921 CDS
T09958
Symbol
SOX5
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zle03000
]
135458921 (SOX5)
Transcription factors [BR:
zle03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
135458921 (SOX5)
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
135458921
NCBI-ProteinID:
XP_064590472
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Position
1A:complement(501112..1093751)
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AA seq
764 aa
AA seq
DB search
MLTDPDLPQEFERMSSKRPASPYGEADGEVAMVTSRQKVGEEESDGLPAFHLPLHVSFPN
KPHSEEFQPVSLLTQENCGHRTPTSQHNTMEVDGNKVMSSFAPHNSSTSPLKAEEGGRQG
GESLSGAALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAM
GSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMEL
AKQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAAQQGFL
LPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGGKIPG
IAQGSLGAAVSPTSIHTDKSTTSPPPKSKDEVAQPLNLSAKPKTSDGKSPTSPTSPHMPA
LRINSGASSLKSSVPATLASPSARANTIGYLNDHDAVTKAIQEARQMKEQLRREQQVLDG
KVAVVNSLGLNNCRTEKDKTTLETLTQQLAVKQSEDGKFSHAMMDFNMSGDSDGSAGVSE
SRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTN
LEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQY
FNVGQQAQLPLATAGVVYPGAIAMAGMPSPHLPSEHSSVSSSPEPGLPALPGAYGPKGDE
PLVKEELQPDEANGDVYDDYDEEEEDPDADYGSDSENHMAGQAN
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgctaactgaccctgatttacctcaggagtttgaaaggatgtcttccaagcgaccagcc
tctccgtatggggaagcagatggagaggtagccatggtgacaagcagacagaaagtggga
gaagaggagagtgacgggctcccagcctttcaccttcccttgcatgtgagttttcccaac
aagcctcactctgaggaatttcagccagtttctctgctgacgcaggagaactgtggccat
aggactcccacttcccagcacaacacaatggaagttgatggcaataaagtgatgtcttcg
tttgccccgcacaactcatctacctcaccgctgaaggcagaagaaggcgggcgccagggc
ggggagtcgctgtccggcgcggcgctgggcacccccgagcgccgcaagggcagcctggcc
gatgtcgtggacaccctcaagcagaggaaaatggaggagctcatcaaaaacgagccagaa
gaaactcccagtattgaaaagctactatcaaaggactggaaagacaagcttcttgccatg
ggatcagggaactttggagaaataaaagggactccagagagcctggctgagaaggagagg
cagctcatgggcatgatcaaccagctgaccagcctgagggagcagctgctggcagcccac
gacgagcagaagaagctggcggcgtctcagatcgagaagcagcggcagcagatggagctg
gccaagcagcagcaggagcagattgcaagacagcagcagcagcttctgcagcagcagcac
aaaattaaccttcttcagcagcagatccagcaggtccagggtcagctgcctccattgatg
atccccgtgttccctccagaccagcgcaccctggcagcagctgcccagcaaggattcctc
cttcctcctggcttcagctacaaggcgggatgcagtgacccctaccccgttcagctgatc
ccaactaccatggcagctgctgccgcagcaacgccgggcctaggccctctccaactgcag
cagttgtatgctgcccagctcgctgccatgcaggtgtctccaggaggaaagatccctggc
attgcccaggggagccttggtgctgccgtgtcccccaccagcatccacacagacaagagc
acaaccagccctcctcccaagagcaaggatgaagtggcccagcctctgaacctctcagcc
aaacccaagacatctgatggcaaatctcccacgtcccccacctctcctcacatgccagct
ctgagaataaacagtggggccagctcactaaagtcctcggtgccagcaacactagccagt
ccttcggccagagccaacacaataggttatttaaatgaccacgacgctgtcaccaaggcc
atccaggaggcgcggcagatgaaggagcagctacggagggagcagcaggtgctggatggg
aaggtggccgtggtcaacagcctgggtctcaataactgcaggacagaaaaagacaaaaca
acactggagaccctgacccagcagctggcagtaaagcagagtgaagatgggaagttcagc
cacgcaatgatggatttcaacatgagtggagattctgatgggagcgcgggggtgtcggag
tcgcggatctaccgggagtcgcgcgggcgcggcagcaacgagccgcacatcaagcgcccc
atgaacgccttcatggtgtgggccaaggacgagcgcaggaagatcctgcaggccttcccc
gacatgcacaactccaacatcagcaagatcctaggatctcgctggaaagctatgacaaac
ctagagaagcagccatactacgaggagcaggcccggctgagcaagcagcacctggagaag
tacccagactacaagtacaagccgcggcccaagcgcacgtgcctggtggacggcaagaag
ctgcgcatcggcgagtacaaggccatcatgcgcaaccggcgccaggagatgaggcagtac
ttcaacgtcgggcaacaggcgcagctgccgctggccacggcgggcgtggtgtacccggga
gccatcgccatggcgggcatgccctcgccgcacctgccctcggagcactcgagcgtgtcc
agcagccccgagcccggcctgcccgcgctgcccggcgcctacgggcccaagggcgacgag
ccgctcgtcaaggaggagctgcagcccgacgaggccaacggcgacgtctatgacgactac
gacgaggaggaggaggaccccgatgcagactatggcagtgacagtgaaaaccacatggcg
ggccaggccaactga
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