Zonotrichia leucophrys gambelii (white-crowned sparrow): 135459068
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Entry
135459068 CDS
T09958
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04510
Focal adhesion
zle04512
ECM-receptor interaction
zle04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135459068 (COL2A1)
04518 Integrin signaling
135459068 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135459068 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
zle00536
]
135459068 (COL2A1)
Glycosaminoglycan binding proteins [BR:
zle00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135459068 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
135459068
NCBI-ProteinID:
XP_064590745
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All DBs
Position
29:3420132..3437960
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AA seq
1419 aa
AA seq
DB search
MCEELRDCPSPEIPFGECCPICPTEQPSGKPGPKGQKGEPGDIKDVVGPRGPPGPQGPAG
EQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGGNFAAQMAGGFD
EKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEPGEPGAAGPMGPRGPPGPP
GKPGDDGETGKPGKSGDRGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGAK
GESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPAGAPGFP
GAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAKGSAGAPGIA
GAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPGPAGEE
GKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLAGPKGATGDP
GRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQPGVMGFPGPK
GANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLP
GPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTD
GPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGARGLT
GPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPGADGQPGAK
GEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP
GPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEPGEDGPAGPD
GPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPGPVGPPGLT
GPAGEPGREGNPGADGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGPTGKQGDR
GETGAQGPMGPSGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQGLPGPPGPS
GDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPPGNPGPP
GPPGPPGTGIDMSAFAGLGQPEKGPDPGRYMRADEAAPGLRPHDAEVDATLKALNNQIES
IRSPEGSRKNPARTCRDIKLCHPDWKSGDYWIDPNQGCTLDAIKVFCNMATGETCVYPSP
GSIPRKNWWSSKAKEKKHVWFGETINGGFHFSYGAEELAPNTANIQMTFLRLLSTEGSQN
VTYHCRNSVAYLDEESGSLRKALLIQGSNDVEIRAEGNSRFTYSVLEDGCTKHTGKWGRT
VIEYRSQKTSRLPIVDIAPMDIGGPEQEFGVDLGPVCFL
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgaagagctgcgggactgccccagccccgagatccccttcggagagtgctgcccc
atttgccccaccgagcagcccagcgggaagcctggccccaagggacagaaaggtgaacct
ggtgacatcaaagatgtcgtaggaccccgaggacccccgggcccgcagggccccgcaggt
gagcagggacagcgaggggaccgcggcgagaagggcgagaagggcgcccccggcccacgg
ggcagggatggggagcccggaaccccaggaaaccccggcccccccgggccccccggaccc
ccgggaccccccggcctcgggggagggaacttcgcggctcagatggctgggggctttgat
gagaaggctggaggggctcagatgggcgtcatgcagggacccatgggccccatgggaccc
cgcggcccccccggcccctccggctcccccggtccccaaggattccaaggcaaccccggt
gagcccggcgagcccggcgctgctggtccgatgggtccccggggacctccgggacctcct
ggcaaacccggtgacgacggcgagactggcaaacccgggaaatccggtgaccgcggcccc
cccggcccccagggcgctcgtggcttccccgggacccccggcctgcctggagtcaaaggc
caccggggctaccccggcctggacggcgccaagggagaggcgggagcacctggagccaag
ggcgagtccggctcccccggcgagaacggctcccccggacccatgggtccccgcgggctg
cccggagagcgaggacgcccgggcccctcgggcgctgcgggcgctcgtggcaacgacggc
ctcccgggcccggccggacccccgggtcccgtcggccccgcaggagcccccggcttcccc
ggcgcccccggctccaagggtgaagcgggtcccaccggagcgcgaggacccgagggtgcc
cagggcccccgcggggaatccgggactcccggctcgcccggccccgccggcgcccccggg
aacccagggaccgatggcatccccggagcgaagggatcggcgggcgctccaggcatcgcc
ggcgctccaggattccccggcccccgcggcccacccggaccccagggagccaccggcccg
ctgggccccaagggacagacgggcgagcccggcatcgcgggattcaaaggcgagcaggga
cccaagggagagacgggccccgcaggaccccagggcgcccccggaccggccggggaggaa
gggaagagaggagcccgcggagaacccggagctgctggacctttggggccacctggagag
aggggagctcctggcaaccgcggcttccccgggcaagatgggctggccggccccaaggga
gccccgggcgagcgcggccccgctggcctggccggccccaaaggagccaccggcgacccc
ggacgccccggagagcccggcctgcctggagccaggggtctcacaggtcgccccggggat
gctgggccccaaggcaaagtcggccccacaggtgcccctggcgaggacggacgtcccgga
ccccccggcccccagggggctcggggccaacctggtgttatggggttccctggtcccaaa
ggtgccaatggcgagcctggaaaagctggtgaaaaaggacttcctggagcaccggggctg
aggggacttcctggaaaggatggagagactggagccgccggacccccaggacctgctggc
ccggcaggggagaggggagagcaaggagcccccggcccctccggcttccagggactgcca
gggccgccaggtccccccggcgagagcggcaaacctggagaccagggcgttcctggagaa
gccggagcccccgggctcgtgggtcccaggggcgagcgcggtttccccggcgagcgcggt
tctcccggtgcccagggcctgcaggggccccgcggcctccctggcacccccggcaccgac
ggacccaagggtgccaccggccccgctggccccaacggcgcccagggacccccggggctg
caggggatgcccggggagagaggagctgctggcatcgccggtcccaagggggacagggga
gacgttggagagaaaggacctgagggagcccctggaaaggacggagctcgcggtctgacc
ggtcctatcggtccccccggccccgctggccccaacggcgagaagggcgagtctggcccc
cccggcccgtccggagccgctggagcccgcggtgcccccggagagcgcggagagcccgga
gcccctggccctgctggattcgctggacccccaggtgctgatggccagcccggagccaag
ggcgagcaaggcgagcctggccagaagggtgacgccggagcccccgggcctcagggtccc
tccggggctcctggaccgcagggtcccactggtgtcaccggtcccaaaggagcccggggt
gctcagggacccccgggagccaccggattccctggagctgccgggcgcgtcggacccccc
ggtcccaacggtaaccccggaccccccggaccccccggctccgcgggcaaggacggcccc
aagggcgcccggggcgacgcgggacccccgggccgagcgggggacccggggctgcagggc
cccgccggcccccccggcgagaagggcgagcccggcgaggacggccccgcgggtccggac
gggccccccggcccccaggggctggcaggacagcgcggcatcgtggggctgccggggcag
cgtggcgaacgcggcttcccggggctgcccggaccctcgggagagcctggaaaacaggga
gcacctggatctgccggtgaccggggaccccctgggcccgtgggaccccctgggctgact
ggaccagctggagagcctggaagggagggaaatcccggcgctgatggacccccgggcagg
gatggggcagcaggagtgaagggcgatcgtggtgagaccggccccgtgggcgctccgggc
gctcccggcgctcccggagctcccggccccgtgggacccactggaaaacagggagacagg
ggagagacgggtgctcagggtcccatgggtccctctggccccgcaggcgcccgggggatg
ccgggtccccaggggccgcgtggtgacaaaggcgaggcgggcgaggctggagagcgcggc
ctgaagggacaccggggcttcaccgggctccaggggctgcccgggccccccggtccttct
ggagaccagggtgctgctggacccgcaggtccctccggacccaggggtccccccggccca
gtgggcccctcaggcaaggacggctccaatgggatgcccggacccatcggcccccctgga
ccccgcgggaggagcggcgagcccggccctgcgggtcctcccgggaaccccggcccgccc
ggcccccccgggccccccggcaccggtatcgacatgtcggcgtttgcggggctggggcag
cccgagaaaggccccgaccccgggcgctacatgcgggcggacgaggcggcgccggggctg
cgtccgcacgatgccgaggtggacgccaccctcaaggccctcaacaaccagatcgagagc
atccgcagccccgagggctcccgcaagaacccagccaggacctgccgagacatcaaactc
tgccaccccgactggaagagcggtgattactggatcgaccccaaccagggctgcaccctg
gacgccatcaaggtcttctgcaacatggccacgggggagacgtgcgtgtaccccagcccc
ggcagcatccccaggaagaactggtggagcagcaaggccaaggagaagaagcacgtctgg
ttcggcgagaccatcaatggcggcttccacttcagctacggcgctgaggagctggcgccc
aacacggccaacatccagatgaccttcctgaggctgctgtccaccgagggctcccagaac
gtcacctaccactgccgcaacagcgtggcctacctggacgaggagtcgggcagcctgagg
aaggcgctgctcatccagggctccaacgacgtcgagatccgcgccgagggcaacagcagg
ttcacctacagcgtgctggaggacggctgcacgaaacacacggggaagtggggcaggact
gtcatcgagtaccgctcgcagaagacctcgcgcctgcccatcgtggacattgcacctatg
gacattgggggacccgagcaggagtttggggttgacctcggccccgtctgcttcttgtaa
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