Zonotrichia leucophrys gambelii (white-crowned sparrow): 135459310
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Entry
135459310 CDS
T09958
Symbol
ABCA1
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle02010
ABC transporters
zle04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
135459310 (ABCA1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
135459310 (ABCA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
zle02000
]
135459310 (ABCA1)
Transporters [BR:
zle02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
135459310 (ABCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
135459310
NCBI-ProteinID:
XP_064591233
LinkDB
All DBs
Position
Z:55089190..55179303
Genome browser
AA seq
2262 aa
AA seq
DB search
MAFWTQLGLLLWKNFTYRRRQTFQLLIEVAWPLFIFFILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWIQGIICNANNPCFRYPTPGESPGIVGNFNASIISRLFSDARRLLLYSQQDT
SIKDVQKVLGKLRKLGNSSGLDLKLRDFLIDNETFSDFLHHNVSMPSSAVEELLDARVNL
QQVIVSGYRMRLRDLCNSSTSSEFLTIQNQTAAMDSEAFICTLSKEKLHAAEQAFRANLN
PLKPLQRQLSFNSSLWDLSETVETLRESIGRLVKELLSMKSWSDMRQEVMFLNNVNASNS
STQIYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNSTEDDVINFYDNSTTPYCN
ELMKNLESSPLSRIIWRALKPLLIGKILYTPDTPAVRKVMSEVNRTFQELGVFRDLGGMW
EEISPKIWTFMESSQEMDLIRTLLKGKALWDLHLPASNWTVEDVARFLSNSPEDFGTENG
SVYTWVDAFNETDRAIQTISRFMECVNLDKLEPVPTEVRLINKSLELLDERRFWAGIVFT
EIAPDSTDLPQHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFVYLQDV
VEQAIIRVQTGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGI
VYEKEARLKETMRIMGLDNGILWLSWFISSLVPLLMSAGLLVLILKMGNLLPYSDPSVVF
IFLSIFGVVTILQCFLISTVFSRANLAAACGGIVYFTLYLPYVLCVAWQDHISFSLKIFA
SLLSPVAFGFGCEYFALFEEQGVGVQWDNFFESPLEEDGFSITISAVMMLFDTFLYGVMT
WYIESVFPGQYGIPRPWYFPFTKSYWFGEEPQDRQHAHPDQKGSSEVCKEEEPVHLSLGV
SIQNLVKVYRDGKKVAVDGLTLNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAFI
LGKDIRSELSTIRQNLGVCPQHNVLFDLLTVEEHIWFYARLKGLPEKKVKEEMDQMATDV
GLPHKLKARTSKLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQ
GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVDSSLS
SCRNSSSTVSYLKKDDSVSQSSSDAGLGSDHESDTLTIDVSAISNLITKHVPEARLVEDI
GHELTYVLPYKAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVADDSGVDAE
TSDGTLPARRNRRVFGDRQSCLRPFTEDDAFDPNDSDIDPAESRETDLLSGMDGKGSYQM
KGWKLTQQQFMALLWKRMLIAKRSRKGFFAQIVLPAVFVCIALMFSLIVPPFGKYPSLEL
QPWMYDEQYTFISNDAPEDAGTHKLLDALLDKPGFGTRCMQGHSIPDTPCTVGQKEWTTA
SVPESVLDIFLKGNWSMANPSPSCECSSEKIKKMLPVCPPGAGGLPPPQREQDTADILQN
LTGRNISDYLVKTYAQIIGKSLKNKIWVNEFRYGGFSLGASSSLVLPPGHEVTDAIKQVK
KILELAQGSSGDRFLNSLSSFMKGLDTKNNVKVWFNNKGWHAIASFLNVINNAILRANLQ
QGENPSAYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQE
RVSKAKHLQFISGVKPVIYWLANFVWDMCNYIVPATLVVIIFICFQQKSYVSSSNLPVLA
LLLFLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNDKLKDI
NDILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAVE
GVVFFLITVLIQYRFFIKPRPVYAKLPPVNDEDEDVTRERQRIISGGGQSDILEIKELTK
IYRMKRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTDVTGGEAFLKGNSILS
NIQEVHQNMGYCPQFDAVNELLTGREHLEFFALLRGVPEKEVCKVGEWAIRKLGLVKYGE
KYAGNYSGGNRRKLSTAIALIGGPPVVFLDEPTTGMDPKARRFLWNCALSVIKEGRSVVL
TSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGANPDLKPVEEFF
GHAFPGSVLKEKHRNMLQYQLPSSPSSLAKIFSILSQNKKRLHIEDYSVSQTTLDQVFVN
FAKDQSDDDHTKDLSLHKNQTVVDIAILNSFLQDEKVKESCV
NT seq
6789 nt
NT seq
+upstream
nt +downstream
nt
atggctttctggacacagctgggattgctgctatggaagaactttacctacagaagaaga
cagactttccagctgctgatcgaagttgcctggcctctgtttatcttcttcatcctgatc
tctgtaagactttcatatccgccgtatgagcagcatgaatgtcactttccaaataaagct
atgccttcagcaggaaccttgccatggatacaggggatcatctgcaatgccaacaaccca
tgtttccgctacccaactcctggggaatcccctggtattgttggaaacttcaatgcctcc
attatttcccgcctgttctcggatgccaggaggttactgttgtacagccaacaggacaca
agtataaaggatgtccagaaggtcctgggaaaactacgcaagttgggaaattcctctggc
ttagacttgaaacttcgggatttcctgattgacaatgagacattctctgacttccttcat
cataatgtgtccatgccatcatctgccgtagaggagttactggatgcaagggtcaacctc
cagcaggtcattgtatctggttatcgaatgcgactgagagatctctgcaatagctcaaca
tcatctgaatttctaacgatccaaaatcagacggcagccatggactctgaagccttcatt
tgcaccttgtcaaaggaaaaactccatgcagctgagcaagccttccgtgctaacctgaat
cctttgaagcctcttcagagacaactttctttcaattcctccttgtgggatctgtcagaa
actgtggaaactttgagagagagcattgggaggcttgttaaagagctgctgagcatgaag
agctggagtgacatgagacaagaggtgatgttcctgaacaatgtgaatgcctcaaactcc
tctacacagatctatcaggctgtgtcacggattgtatgcggccatcctgaaggtggaggg
ctcaaaattaaatccctcaactggtatgaggataacaattacaaagcactgtttggaggc
aacagcactgaagatgatgtgattaacttctacgataactccacaacaccctactgcaat
gagctaatgaagaacctggaatccagcccgctttccaggattatctggagggctttgaag
cccttgctgattgggaagatcttgtacactccagatacaccagctgtaaggaaggtcatg
tctgaggtgaacaggacattccaggagctgggtgtgtttcgtgacctcgggggaatgtgg
gaggagataagcccaaagatttggacatttatggaaagtagtcaggaaatggatctcatt
cggacgttgctgaaaggcaaagccctctgggacctgcacttgccagcttccaactggaca
gtagaggatgttgcccgtttcctgtcaaacagtccagaggactttgggacagaaaatggc
tctgtgtacacctgggtggatgctttcaatgagacagaccgggctatccagaccatctcc
cgcttcatggagtgtgtcaacctggacaaactggagcctgtgcccacagaagtccggctc
attaacaagtccttggaacttctggatgaaaggaggttctgggctggcatagtattcact
gaaatagctcctgacagcacagaccttcctcaacacgtgaaatacaagatacgcatggac
attgataatgtggaaaggaccaacaagatcaaggatgggtactgggatcctggtccccgt
gctgatccctttgaggacatgcgctatgtctggggaggctttgtctacctgcaggatgtg
gtagaacaggccatcatcagggttcaaacaggcacagagaagaagacaggagtttatgtg
cagcagatgccctacccatgttacgtggatgacatatttctgcgtgtcatgagccgctcc
atgcctctcttcatgacactagcttggatttactcagtggctgtgataattaagggcatt
gtgtatgagaaggaagcccggctgaaagaaacaatgaggattatgggacttgacaatggc
atcctttggttaagctggttcattagcagccttgtccctctcctgatgagtgcaggactc
ttggtgctgatcctgaagatggggaatctgctgccttacagtgatcctagtgtggtgttc
attttcctctccatcttcggcgttgtgaccatcctccagtgcttcctcatcagcaccgtg
ttctccagggccaacctggcagctgcctgtgggggcattgtctacttcacactgtacctg
ccttatgtgctctgtgttgcctggcaggaccacatcagcttctcactcaagatttttgcg
agcctgctgtctccagtagcctttggtttcggttgtgagtactttgcgctctttgaggag
cagggagttggtgttcagtgggacaacttctttgagagcccactggaagaagatggcttt
agcatcaccatatcagctgtcatgatgctgtttgataccttcctctacggagtcatgacc
tggtacattgaatctgtcttcccaggccagtatgggatacccagaccctggtactttcct
ttcacaaagtcgtattggtttggggaggaaccacaggacaggcagcacgcccatcctgac
cagaaggggtcttcagaagtctgcaaggaagaagagccagtgcatctgagtcttggtgtt
tccatccagaacctggtcaaagtttaccgtgatggcaagaaagttgctgtagatggtctc
acactcaacttctatgaaggacaaatcacctcctttctgggacataatggagcagggaaa
accactaccatgtccattttgactggcttgtttcccccaacttcgggtacagccttcatc
ctaggcaaagatatccgctctgagcttagcaccatcaggcagaacctgggtgtatgtcca
caacacaatgtgctgtttgacttgctgactgtggaggagcacatctggttctatgctcgg
ctcaaagggctgccagaaaagaaggtgaaagaggagatggatcagatggcaacagatgtt
ggtttgcctcacaaactgaaagctaggacaagcaagctctctggtggcatgcagaggaag
ctctctgttgccttagcttttgtcggtggctccaaagttgtcattctggatgagcctaca
gctggggtggatccttattctcgcagaggaatatgggaactgcttctgaagtatcggcaa
ggtcgcactatcattctctccacgcaccacatggatgaggccgacattctgggggaccgg
attgctataatttctcatggcaagctctgctgtgttggctcttctctcttcctgaagaac
cagctgggaacaggctattatttgaccctggtcaaaaaggatgtggattcctctctgagc
tcctgccgaaacagcagcagcacagtttcctatctgaaaaaggatgacagtgtctcccag
agcagctctgatgctggccttggcagtgaccatgaaagtgacacattgacaatagatgtg
tctgcaatttcaaatctcattacaaaacatgttcctgaggcaagactggtggaggacata
ggtcatgaattaacctatgtcttgccatacaaagctgctaaagagggagcttttgtggag
ctgttccatgaaattgatgaccgtctttctgatcttggcatttccagctatggcatctcg
gaaactactctggaggagatcttcctgaaagtggctgatgatagcggtgtggatgcagaa
acctcagatggcacattgccagccagaaggaacagacgtgtgtttggagacagacagagc
tgccttcgtccctttacagaagatgatgcatttgatcctaatgactcagacatagatcca
gcagaatccagggagacagaccttctcagtggcatggatgggaaaggctcctaccaaatg
aagggctggaagctgacccagcagcagttcatggctctgttgtggaagaggatgctcatt
gccaagagaagccggaagggcttttttgcccagattgtgctgccagctgtctttgtgtgt
attgctctcatgttcagcctgattgttcctccttttgggaagtaccccagcctggaatta
caaccctggatgtatgatgagcagtacacttttattagcaacgatgctccagaagatgca
ggcactcacaagcttttggatgcccttcttgataagccagggtttgggacacgctgtatg
cagggacattccatcccggacactccttgcactgtggggcagaaggaatggaccactgct
tcagtcccagagtcagtgctggatatcttcctgaaaggcaactggagcatggcgaatcct
tccccatcttgcgagtgtagcagcgagaagatcaagaagatgctgcctgtgtgtccccct
ggtgcaggtggcctgccacccccacagcgtgagcaagacacagctgacatcctccagaat
ctgacaggtcgcaatatatcagactacctagtgaagacctatgcacagatcattgggaaa
agcttaaagaataaaatctgggtgaatgagttcaggtatggtggcttttccttgggagcc
agcagttccctcgtgcttcctccaggtcatgaagtcactgatgccattaaacaggtcaag
aaaattttggagctggcacaggggagttctggggatcgatttctcaacagtttatcaagt
ttcatgaaaggcctggatacaaagaacaatgtgaaggtgtggtttaacaacaagggctgg
catgccattgcgtccttcctgaatgtgatcaacaatgcaatccttcgggccaacctccag
cagggtgaaaatcccagtgcttatgggatcactgccttcaatcacccactcaacctcacc
aagcagcagctgtctgaagtagctctgatgaccacctctgtggatgtccttgtgtccatc
tgtgtgatctttgccatgtcctttgttcctgccagctttgtggttttccttattcaggag
cgtgtcagcaaggctaaacacttgcagttcatcagtggtgtgaagcctgttatctactgg
ctggccaactttgtgtgggatatgtgcaactacattgttccagccacactagttgtcatc
atcttcatctgcttccaacagaagtcctatgtatcctcctctaacttgcctgttctggct
ctcctcctgtttctctatgggtggtccatcacccctctcatgtatcctgcctcctttgtg
ttcaagatccctagcacagcatatgttgtgctgaccagtgtcaatctcttcatcggcatc
aatgggagcgtggccacctttgtcctggagctcttcaccaacgataagctgaaggacatc
aatgacatcctgaagtctgtcttcctcatcttccctcacttctgcctgggccggggactc
atagacatggtgaaaaaccaggctatggctgatgctctggagaggtttggagagaatcgg
tttgtgtctcctctgtcatgggacctggtgggaaggaacctctttgccatggcagtagaa
ggcgtggtgttttttctcatcacagtgctcatccagtacaggttcttcatcaaacccagg
cctgtctatgccaagctgcctcctgtgaatgatgaagacgaggacgtaaccagagagagg
cagaggataattagtggaggaggacagagtgacattttggaaatcaaggagctaaccaag
atttacagaatgaagagaaagccagcagttgacaggatctgtgttggaatccctcctgga
gagtgctttggactcctgggagtaaatggtgctggcaagtcatccacttttaagatgcta
actggtgatacagatgtcacgggaggagaagctttcctcaaaggaaacagtatcttgtcc
aacatccaagaagtccatcagaacatgggctactgcccacagtttgatgctgttaatgaa
ctgctgacagggcgagagcacttggagttctttgcactcctgagaggtgttccagagaaa
gaagtctgcaaggttggcgagtgggcaattcggaaactgggccttgtgaaatacggagaa
aaatacgctgggaattacagtggagggaacagacgcaagctttccacagccattgctctc
attggagggccacctgtggtgttcctggatgagccaacaacagggatggatcccaaagca
cgtcgcttcttgtggaactgtgctctgagtgtaatcaaggaggggagatcagtggtgctc
acgtctcacagcatggaagaatgtgaagccctgtgcactcgaatggcaataatggtcaat
gggcgattcaggtgtctgggcagtgtccagcacctaaaaaacagatttggagatggttac
accatagtggtgagaattgctggggcaaacccagacctgaagcctgttgaggagttcttt
gggcatgccttccctggaagtgtcctgaaggaaaaacatcggaatatgctgcagtaccaa
cttccctcttcaccatcctccctggccaaaatattcagtattctctcccagaacaagaag
agactccacatagaagactactccgtttctcagaccacacttgaccaagtttttgtaaat
tttgctaaggaccaaagtgatgacgaccatactaaggacctgtcattgcacaaaaaccag
actgtggtagacattgcaatccttaactccttcctgcaagatgagaaggtaaaagaaagt
tgtgtgtga
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integrated database retrieval system
