Zonotrichia leucophrys gambelii (white-crowned sparrow): 135459348
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Entry
135459348 CDS
T09958
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zle03021
]
135459348 (CHD1)
03036 Chromosome and associated proteins [BR:
zle03036
]
135459348 (CHD1)
Transcription machinery [BR:
zle03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
135459348 (CHD1)
Chromosome and associated proteins [BR:
zle03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
135459348 (CHD1)
SLIK complex
135459348 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
DEAD
Motif
Other DBs
NCBI-GeneID:
135459348
NCBI-ProteinID:
XP_064591342
LinkDB
All DBs
Position
Z:18360931..18415683
Genome browser
AA seq
1807 aa
AA seq
DB search
MNGHSDEESVGNSSGESSRSDDDSGSASASGSGSSSGSSSDGSSSQSGSSDSDSGSESGT
RSESESDTSREKKQIQSKPTKVDGSEFWKSSPSILAVQRSGVLKKQQQQKAASSDSVSEE
DSSSSEDSADDSSSETKKKTHKDEDWQMSGSGSMSGTGSDSESEEDREKSSCEESESDYE
PKNKVKSRKPPTRIKPKSGKKNAGPKKRQLDSSEDDDEEDDDDYDKRGSRRQATVNISYK
EAEETKTDSDDLLEVCGEDVPQPEEDEFETIEKFMDSRVGRKGATGAATTIYAVEADGDP
NAGFEKSKEPAEVQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQETKRWL
KNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSW
EDGALIAKKFQARIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHESLELRD
YQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLT
SWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSFL
GGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPE
KFSSWEDFEEEHGKGRECGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQK
QYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHL
IRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELR
KQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQ
KKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKE
ELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVAN
FSNMDEDDIELEPERNSRNWEEIIPEVQRRRIEEEERQKELEEIYMLPRMRNCAKQISFN
GSEGRRNRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGG
PLERLDAVARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGQERAGGRLGKVKGPTFR
ISGVQVNAKLVISHEEELAPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNLLI
GIYEYGYGSWEMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEAQ
RLAGAGNSKRRKTRTKKNKVLKAAKLKEEIKSDSSPQPSEKSDEDDDENNKDEIVSVKHL
HKKFKAEKENEEKPEPDTGIKKEAEEKRETKEKENKRDLKRDKKEKEDKKELKEKDIKEK
RENKVKESTQKEKEVKEEKVNEIKSENKEKTKKIPLLDTPVHITASSEPVPISEESEELD
QKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTSPEQ
IKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQHSDQNISGHVNTHVIRNPDVE
RLKENTNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDAYKKNDSRKRPYSAFSNGKDHRDW
DHYKQDSRYYSDSKHRKLDDYRSRDHRSSLEGSLKDSRVHLDHRSHSDHRTHSDHRSSSE
YSHHKSRDYRYHSDWQMDHRASGSAPRSPLDQRSPYGSRSPLGHRSPFEHSSDHKSTPEH
TWSSRKT
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggcacagtgatgaagaaagtgtaggaaacagcagtggagagtcaagccgatca
gatgatgattctgggtcagcatcagcttctggatctggttcaagttctggaagcagtagt
gacggaagcagcagccagtcaggcagcagtgactctgactctggttcagagtcagggact
cggtcagaatcagagtctgacacatctagagagaagaaacaaattcaatctaaaccaaca
aaagttgacggatctgagttttggaagtctagtccaagtatacttgccgtgcaaagatca
ggagtactcaagaagcagcaacaacaaaaggcagcctcatcagacagtgtttcagaagag
gactcctcaagtagtgaagattcagcagatgactcatccagtgaaaccaagaaaaaaaca
cataaagatgaagactggcaaatgtcaggatcagggtcaatgtcgggaacaggttcagat
tctgaatcagaggaagacagagagaaaagcagctgtgaggagagtgaatctgactatgag
ccgaaaaacaaggtcaaaagccgtaaacctccaaccagaattaagccaaaaagtgggaag
aagaatgcaggaccaaaaaagaggcaacttgattcttcagaggatgatgatgaggaggat
gatgatgattatgataagaggggatctcgtcgtcaggcgacagtcaacattagttacaag
gaagctgaagaaaccaagacagattctgatgatttgctagaagtttgtggagaagatgtt
ccacaacctgaagaagatgaatttgaaactatagagaaatttatggatagtcgagttggc
cgtaaaggagccacaggtgctgcaaccacaatatatgcagttgaggccgatggtgatcca
aatgctgggtttgaaaaatcaaaggagccggcagaagtacagtatctcattaaatggaaa
ggttggtcacacatccacaacacttgggaaactgaggaaacactgaagcaacaaaatgtt
aaaggaatgaagaaactggacaattacaagaaaaaggatcaggaaacaaaacgatggctg
aaaaatgcttctccagaagatgtggaatattacaactgccagcaggagcttacagatgat
ctacataaacaataccagatagtggaaagaataattgctcattcaaatcagaaatcagct
gctggttatccagactactattgtaagtggcagggtctaccttattctgaatgtagctgg
gaagatggagctctcattgccaaaaagtttcaggcacgcattgatgagtacttcagcaga
aatcaatccaagaccactccctttaaagattgcaaggttctaaaacaaaggccacgattc
gttgcactaaaaaaacaaccatcttacattggaggacacgaaagtttagagttaagagat
tatcagttaaatgggttgaattggcttgctcactcatggtgcaaagggaatagctgtatt
cttgcagatgaaatgggtctaggtaaaacaatacaaacaatttcttttctgaactatctg
tttcacgaacatcaattgtatgggcctttcttgttggttgtgccactttctaccttgacg
tcttggcaaagagagattcaaacctgggctcctcagatgaatgctgtagtttacttagga
gatataactagtagaaatatgataagaactcatgaatggatgcatccacagaccaaacga
ttgaaatttaacatactcttaacaacatatgaaattttgctaaaggataagtcattcctt
ggtggtctgaattgggcattcataggagttgacgaagctcatcgtttaaaaaatgatgac
tctcttctgtacaaaactttaatagactttaagtctaaccatcgtcttcttattactgga
acacctctgcaaaactctctcaaagagctttggtctttactccacttcatcatgccagaa
aagttctcttcatgggaagattttgaagaggagcatggcaaagggagagaatgtggttat
gcaagtcttcacaaagaacttgaaccatttctgctgagaagagttaaaaaagatgtagaa
aagtccttacctgctaaagttgagcaaattctgaggatggaaatgagtgcattgcagaag
caatactacaagtggattttaaccaggaattataaagcccttagcaaaggttcaaaaggc
agtacctcaggctttttgaacatcatgatggaactcaagaagtgttgcaaccattgctac
ctcattaaaccaccagatgataatgaattctataataaacaggaggccttacagcattta
atacgtagcagtgggaagctaatccttcttgacaagctactgattcgtctgcgagaacgt
ggcaacagagtcctgattttttcacagatggtaaggatgctggacatcctggcagaatat
ctgaaatatcgtcagtttccatttcagagacttgatggatcaataaaaggggaattgagg
aaacaagcactggatcattttaatgcagaaggatcagaggacttctgctttttactgtct
accagagctggaggattaggtatcaacttggcatctgctgatacagtggttatatttgat
tctgactggaatccacagaacgatctgcaagcacaggctagagcgcatagaattggacag
aagaaacaggttaatatttatcgactagtcacaaaaggatcagtagaagaagatattctt
gaacgagccaagaaaaaaatggtgttagatcatttagtaattcagagaatggacactaca
gggaaaactgtgttacatacaggctctactccttcaagctcaacaccttttaataaggag
gagttgtcagcaattttaaagtttggtgctgaggaactttttaaagaacctgaaggggaa
gaacaggagcctcaagaaatggatatagatgaaatattgaagagggctgaaactcgggaa
aatgagccaggtccattaactgtaggagatgagttgctttcgcagttcaaggtggccaac
ttctccaatatggatgaagatgatattgagttggagccagaaagaaattcaagaaattgg
gaagaaatcattccggaggtccagaggcgaagaatagaagaggaggaaagacaaaaagaa
cttgaagaaatatacatgcttccaagaatgagaaactgtgcaaaacagattagcttcaat
ggcagtgaagggagacgcaataggagtagaagatactctggatctgatagtgactccatc
tcagaaagaaaaaggccaaaaaaacgtggaagaccacgaactattcctcgagaaaatatt
aaaggatttagtgatgcagagataaggcggtttatcaagagttacaagaaatttggtggc
cctcttgagaggttagatgctgtagctagagatgctgagctagttgataaatcagagaca
gacctcagacgtttgggagagcttgtacataatggatgcattaaagccttaaaggacaat
tcatctggacaagaaagagcaggaggtagacttgggaaggttaaaggcccaacattccga
atctcaggagtgcaagtaaatgcaaagttagtcatctctcatgaagaagagttggcacca
ttgcacaaatccattccttcagatccagaagaaagaaaaagatatgtcatcccatgccac
actaaggcggctcattttgatatagactggggtaaggaagatgactccaatttgttgata
ggcatctatgaatatggttatggcagctgggaaatgataaaaatggatcctgatctcagt
ttgacacagaagattttgcctgatgatccagataaaaaaccccaggcaaagcagttacag
acccgtgcagactacctcattaaattactgaataaagaccttgcgaggaaggaagcacaa
aggcttgctggagcaggcaattcaaagaggaggaaaacaagaactaagaagaataaggtg
ctaaaggctgcaaaattaaaagaagaaataaaaagtgattcttcaccacaaccgtcagaa
aaatctgatgaagatgatgatgagaataacaaggatgagattgtttcagtgaaacatctg
cataaaaaatttaaagcagaaaaagaaaatgaagaaaagcctgagccagatactggtata
aagaaggaggctgaagaaaagagagagacaaaagaaaaggaaaataagagggatttgaaa
agggacaaaaaagaaaaagaggataagaaagaattaaaagaaaaggatattaaagaaaag
agagaaaacaaagtaaaagaatccacacagaaagaaaaagaagtaaaggaagagaaggta
aatgaaatcaaatccgaaaataaggaaaaaactaaaaaaattccattgctggatactcca
gttcatattactgcttctagtgaaccagttccaatatcagaagaatctgaagagctagat
cagaaaactttcagtgtgtgcaaagaaagaatgagacctgtcaaggcagcattgaaacag
cttgatcgaccagagaaaggcctttctgaaagagaacagctggaacatactagacagtgt
cttatcaaaattggggatcatattactgagtgtctaaaggagtacacaagtcccgaacaa
attaaacagtggagaaaaaatttgtggatttttgtctctaagtttacagaattcgatgcc
agaaagctgcacaaactgtataaacatgcaatcaaaaaacgtcaagagtctcagcaacac
agcgatcagaatattagcggtcatgtgaatacacatgtaattagaaatccagatgtggaa
aggttgaaggagaatacaaaccatgatgatagtagcagggacagctattcctctgacaga
catctgtcacaataccatgatcatcataaggacaggcatcagggagatgcttacaagaaa
aatgattccaggaaaaggccttattcagccttcagcaatggaaaagatcacagagactgg
gatcactacaaacaagacagcaggtactacagtgatagtaaacacaggaagttagatgac
tacaggagcagagaccacaggtcaagcctggaagggagtctaaaagacagccgggttcat
ttggatcaccgttcccattcagaccacaggacacattcagatcaccgttcctcttcagag
tacagccatcataaatctagagattataggtaccactcagactggcaaatggaccataga
gcttcaggtagtgccccaaggtcacccctggatcagagatctccttatggttcaagatct
cccctcggtcacagatctccgtttgaacattcatcagatcacaaaagtacacctgaacat
acatggagtagtcggaaaacataa
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integrated database retrieval system
