Zonotrichia leucophrys gambelii (white-crowned sparrow): 135459636
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Entry
135459636 CDS
T09958
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zle03041
]
135459636
Enzymes [BR:
zle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135459636
Spliceosome [BR:
zle03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
135459636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
DEAD
R3H
AAA_19
HA2_N
nSTAND3
Ank_2
ATPase
Ank_4
AAA_22
Ank
NPHP3_N
ResIII
PhoH
AAA_7
AAA_16
Sigma54_activat
AAA_30
AAA_23
AAA_29
SRP54
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
135459636
NCBI-ProteinID:
XP_064591936
LinkDB
All DBs
Position
Z:complement(69317959..69347558)
Genome browser
AA seq
1416 aa
AA seq
DB search
MSRPRNVPPWQHGAGTAGSGVPAASGRGRGGKGLRDIRVDEEVEIAVNLALERFRYGEDT
EMEFPSSFTRTERAFVHRRCHSLGLISKSKGKGANRYLTVRKKDGSELKRGVMTCALTSG
TKHVVRTLIQNFPVTYKERTELLPKTEQGNAYAVESANREVKTSGRLSDGIPQVPVKRGE
SEFDSFRQSLPVFEKQEEIVKIIKDNKVVLIVGETGSGKTTQIPQFILDDCHKNGTPCRI
FCTQPRRLAALAVAERVAAERREKIGQTVGYQIRLESRISPKTLVTFCTNGILLRTLMAG
DSALSTVTHIIVDEVHERDRFSDFLLIKLRDVLQSQANLKLIISSAALDADLFIRYFGRC
PVIHIQGRPFEVKEMFLEDILRSTGYTNEEMVKYKKEKPQEEKQQSTLTEWCAAQENNTK
LEPARPRFVPRAAEECSLLGDDGDAVFNQLTEKDVNCLELWLIKEMDSCLSDIWLHKDID
AFAQVFHLILNENVSVDYRHSETSATALMIASGRGFLSQVEQLISMGANIHCRSSNGWMA
VDWAKHFGQTEVVDLLESYSASAGFGNLDESSLVRTSGSDLSAEDRELLTAYHHSFDDEK
VDLDLIMHLLYNICHSSETGAILIFLPGYDEIVSLRDRILFDDRRFADNAYRYQVFMLHS
NMQTSDQKKVLITPPPGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALSCVTML
KMVWISKASAIQRKGRAGRCQPGVCFRLFSRLRFENMLEFQTPELLRMPLQELCLHTKLL
APINCSVVDFLMKAPDPPPALIVKNALQMLKAIDAMDPWEDLTELGYHLTELPVEPHLGK
MLLCAVVLKCLDPVLTIVCALAYRDPFVLPALASQKRAAMLCRKRFTAGTFSDHMVLLRA
FQAWQKARSDGWERAFCEKNFLSPATMQIIAGMRTQLHGQLRASGFVRARGGADIRDVNA
NSENWAVVKAALVAGMYPNLVHVDRRSLVLTAPKEKKVRFHPTSVLSQPQYKKIPSVNSQ
TAAVQALPADWLIYDEMTRAHRIASIRCCSVVTPITVALFCGPARLPSNALQASSSCQGD
RVSSDSSDSEMEDRTTSNVSLLKLDEWLHLKLDSEAAGLLLQLRQKWHSLFLHRMRAPSK
SWSRVDEAIVRAVVAVLTIEEQSARLQQPSGIGQKPRPVVSEDCLVPSTWRSTNTRRSTA
ETEFSDSSNDEKVLMRSTRQPKKYKRKNILHSKQTSDERSDRSSVKSADSSSFPSPCASP
SSPMSGKAPESPSPRQNKPVRYFIMKSSNFQNIEISQQKGIWSTMPGNELKLNGAFRQSS
VVYLIFSVQGSGHFQGFASMCSSIGCEKSPDWGSAELGGVFKVEWIRKESIPFQFAHHLL
NPWNDNKKVQISRDGQELEPQVGEQLLQLWDHIPLE
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggccgaggaacgtcccgccgtggcagcacggcgcgggcacagcgggctcgggc
gttcccgccgcgtcgggccgcggccgaggcggcaaaggtctgagggatatccgtgtggac
gaggaggtggagatcgcggtgaacctcgctctggagcgattccgctatggcgaggacacg
gaaatggagtttccgtcttctttcactagaaccgaaagagcatttgttcaccggcgctgt
cattctcttgggctgatttcgaagagcaaaggaaaaggagcaaatcgatacctaaccgtg
agaaaaaaggatggatcagaactcaaacgtggagtaatgacttgtgccttaacttctggt
acaaaacacgttgttcgtactttaattcaaaattttcctgtcacatataaagaacgaaca
gaacttctgccaaagacagaacaaggaaatgcatatgcagttgaatctgcaaacagagaa
gtgaagacaagtggacgacttagcgatggtatcccccaggttcctgtgaaaagaggggaa
tcagagtttgattctttcaggcaatcactaccagtttttgaaaagcaagaagaaattgtt
aaaataataaaggacaataaagttgttttgattgtaggagagactggatcaggaaaaacc
actcaaatcccccagtttattcttgatgactgtcacaaaaatggaactccctgccgtata
ttttgcactcagccaagacgtttggcagcacttgctgtggctgaaagagtggcagcagaa
agaagagaaaagattggacagacagttggttatcagatccgattagaaagcaggatttct
ccaaagactctggtaaccttttgcactaatggcatactgcttcgcacgctgatggcagga
gacagcgccctgtcaaccgtgacacatatcattgtggatgaagtacatgagagggatagg
ttcagtgacttcttacttataaaactgagagatgtgttgcaaagccaagctaatttaaaa
ctaattatttctagtgctgctctagatgcagacctctttattaggtattttggacgttgc
ccagtaatacacatccaaggaagaccttttgaagttaaagagatgtttttggaggacatt
ttacgaagtactgggtatacaaacgaagagatggtaaagtacaaaaaagagaagccgcaa
gaagaaaaacagcaaagcactttgactgagtggtgtgctgctcaagaaaataatactaag
ctggaacctgcgagaccaaggtttgtcccaagggcagctgaagagtgtagtcttttgggt
gatgatggtgacgcagtatttaatcaactgactgaaaaagatgtgaattgccttgaactg
tggttaataaaagaaatggattcttgtctttctgacatctggttgcataaagatattgat
gcctttgctcaggtgttccatctcattttaaatgaaaatgtcagtgttgattataggcac
agtgaaaccagtgcgactgcactaatgattgcttcagggagaggctttttgagtcaagta
gagcagctgatcagtatgggagcaaatatccactgcagatcttctaatggctggatggct
gtggactgggctaagcactttggacagaccgaggttgttgacctgttggaatcctacagt
gcttcagcaggatttggaaatctggatgaaagttccctggtccgaacaagtggtagtgac
cttagtgcagaggacagagagctgttgacagcttatcatcacagttttgatgatgaaaaa
gtggatcttgaccttattatgcacttactttataacatctgtcacagttctgagaccgga
gcaattttaatatttcttcctggatatgatgagatagttagcctgagggaccgtattcta
tttgatgacaggagatttgctgacaatgcatacagataccaggttttcatgcttcattca
aatatgcagacttcggatcagaagaaagtacttataactccacctcctggtgtgcgcaaa
ataattctttctacaaatatagcagaaaccagcataacagtcaatgatgttgtatttgtt
attgactcaggcaaggtgaaagagaagtcttttgatgcactgagttgtgttacaatgctg
aagatggtgtggatttcaaaagccagtgctatccagagaaaaggcagggctgggcgctgt
cagcctggagtctgttttcgtctcttcagtaggctccgatttgagaatatgttggaattt
cagactccagaacttctaagaatgccacttcaggagctttgtttacacacaaaacttctg
gctccaattaattgttcagttgttgactttcttatgaaagctcctgatcctccaccagct
ttaattgtgaaaaatgctctgcaaatgctcaaggctatagatgccatggacccttgggaa
gatctcactgaacttggttatcatctcactgaattgccagtggagccacacctcggtaaa
atgctgttgtgcgccgttgttttgaagtgcctggatcctgtcctgaccattgtctgtgct
cttgcctaccgagaccccttcgtgctgcccgcgctggcctctcagaagcgggcggccatg
ctgtgcaggaagcgtttcactgcgggaaccttcagcgaccacatggtgcttctcagggct
tttcaggcatggcagaaggcacgcagtgatggctgggagagagccttctgtgaaaagaac
ttcctgtctccagccacaatgcaaatcatcgcaggaatgagaacacagttgcatggccag
cttagagcctcaggttttgttagagccagaggaggagctgatattagagatgttaatgct
aactctgaaaactgggctgtagttaaagctgccctagtggctgggatgtatcccaatctc
gtgcatgtagaccgacggagcctggttttaactgcaccaaaggagaagaaagtgcgattt
catccaacctctgttcttagtcaacctcagtataaaaagattccctcagtgaatagccaa
actgcagctgttcaggcactccctgcagactggctgatatacgatgaaatgacgagagct
cacaggatagcaagcatcaggtgctgttctgttgtaacacccatcactgtggctctcttc
tgcggaccagctaggttaccaagtaatgcgttacaggcatcttcatcctgtcaaggagac
agggtatccagtgatagcagtgacagtgagatggaggacagaacaacttctaatgtatca
ttactgaagctagatgaatggctccacctcaaactggactctgaagctgctggcttgctg
ttgcaactcagacagaagtggcatagcttatttctgcatcgcatgcgagctccttctaaa
tcgtggtcgcgagttgatgaagcaattgtaagagcagttgtagctgttttaactattgaa
gaacagtctgcacgtttgcagcagccttcaggaattggtcagaaaccaagacctgtggtt
tctgaagattgtcttgtaccatctacatggaggtcaactaacaccaggagaagtacagca
gaaactgaattctctgactcctctaatgatgaaaaagttctgatgaggtctacacgtcag
ccaaagaagtacaaacgaaaaaatattttacactccaaacaaacttcagatgagaggtca
gatcgatcatcagtgaaatctgcagacagcagtagcttccctagcccctgtgctagtcca
tcttctccaatgtctgggaaggctcccgaatcaccttcaccaagacaaaataagccagtt
cggtactttataatgaaaagcagcaacttccagaacattgagatttctcagcagaagggt
atatggtccactatgccaggcaatgaacttaaactgaatggagcctttaggcaaagcagc
gtggtttacttaatattttctgtccaggggtctggacacttccagggttttgctagcatg
tgttcatcaatagggtgtgagaaaagtccggactggggatctgctgaacttggaggtgta
tttaaggtggagtggatccgaaaagaaagcattcctttccagtttgcacatcatttgctc
aacccttggaatgacaataagaaagtacaaataagcagagatggccaggagctcgaacca
caagttggagagcagttgttgcagctttgggaccatattcctttggagtga
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integrated database retrieval system
