Zonotrichia leucophrys gambelii (white-crowned sparrow): 135460127
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Entry
135460127 CDS
T09958
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
zle03036
]
135460127 (SHOC1)
Chromosome and associated proteins [BR:
zle03036
]
Eukaryotic type
Meiosis-specific proteins
Others
135460127 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
135460127
NCBI-ProteinID:
XP_064592867
LinkDB
All DBs
Position
Z:complement(63358288..63405812)
Genome browser
AA seq
1456 aa
AA seq
DB search
MLRTSQNKMFAALKYHSTDYLYESMARQKFSIWKLSLCFPPCLHQDEKYHLNGLFADDKY
RKPWTRIGSTQNMMAISVLDQWKRSLPVEDFLEKKPISSVEFQSSNDLIEVIPSSNPCSQ
TDTEESFLLMKNGFKEDSTQDKYLKIYYATEFKEPQQDLCLEEEFVFIDNLESFRKKMPN
LSILLSRLQFFLVKDPLLDSEGQFLTAENIFRECLTFQNGMKMEESQNDLQGIKENFCTV
SIKDEEYFLLPVDLELSKLKSGRSVAVPSYLELKEVLNLAPVTVDDEDLCKQVIREDLKA
EITCKIEISKYCAIPQEVCSSISTSMLEFCESAEYIPYLKDEMEVPLTPPCRQQRSWVNF
PCRGLQEEPISLSGNSILIAEPSREFLESLVWQSEKYRDNMSSLLLVEHPAVNLAHQHHS
LRDLQKKLLLEVEAPMLGSLEEGWWLHRVLNPAAVEILEQFNMDGSNANSLLPTEVETFT
QFTTYKLERWLEEKNCVTNQELLSAEGHSSEKVVNPDLSLQIQRQNFAVSALSPAKIHST
NTSIAELTGGSISKIKTEEAIYFLNQEKKTPEPFESDSCKDVSSKLDKSSCSGKPASLAL
ASKWANDDSDLNNFIMMRSKYTVTQREDKYYVDRPEKVVQPEDQHINILKEDNSFCETVK
TEENTQENKDSITINIQPSESQCQAYCLLEEAAIPVLKDLTHLGVLASVTWSFGSVKIDH
TRFFLKQQEKVIYDNFKQGKVDEKEILLFRHAALVHVLVTVRDLLLTCGWDTALGYLSKA
KDIYKNILESCLNNIWRQLKIVQYSSQKKHETHPKITALQCEMLNWMKSCGEKHSVKILI
ITRMDSEREKDAFIHPLSRIEGLKAVDLNSEKKGSPLSCKEIISNLSRYSCIIVHNQQIR
ADFPWTHFSLVMEYDYSENSGWKNLCKNLNVTYMTFKTTFPETRRMGNHGGSFLLEVQIP
YVFLTTEGLLNMPDILQLFESKYSITFVERSSSYSLRLFGSADQYVVLTVDECTAIFLQS
VEELNYEDSCDTVISRLMALSLQYMCCWIIFYSKERLSLEYSLKGNTLLNLVLIYATLIE
LTQKSEDFEVKVVLTPGIEETALVIRQIADNVLIASNISPHEWLDKSWLSILPSEPEKCL
LTFPCINPLVAQFMLKKGSSLNRLFLANFDQLQELLPQAPKKVLKHFSDMISSYSLNAAA
LEKTVKGASHPENQNKVNTLYLDNKQNCQILELPGPSCMNAEALNPPLNYHKGFLKSDLP
SCMQKKACSSDVITRRKLNFFAVSKDNEDFAHPEVKNSLHVQRQPFRMHNSSDHSSKDSE
KQDFFAAFSDCAPQESSKSFLDEFRDTTFKSPEIQIDQSLWNDSSSTGPHNSFAHDGFLS
DFFDDTNELQNLNFSQIGETPKGKRKKRPPFLWTKEKIKTDSGFPELQEFKKRKLTYERV
PGRRDGQTRLKFFSAK
NT seq
4371 nt
NT seq
+upstream
nt +downstream
nt
atgctgagaacatcacaaaacaagatgtttgcagctttgaagtatcactcaacagactat
ttatacgagagcatggcaaggcagaagttttccatctggaaattatccctttgctttcct
ccctgtttgcatcaagatgaaaagtatcatctcaatggactctttgctgatgataagtat
aggaagccatggactagaattggttcaacacagaacatgatggctatttcagtattggat
caatggaagagaagtttacctgtggaggatttcctggaaaagaaacctatctcctctgta
gagtttcagagtagtaatgatttaatagaagttattccaagttcaaatccttgctctcag
actgacacagaagaatcttttttacttatgaagaatggttttaaggaagactccacccaa
gacaaatatttgaagatctattatgccactgaatttaaagaaccacaacaagatttgtgt
ttggaagaggagtttgtttttattgacaatcttgaaagttttcgtaaaaaaatgccaaat
ttatctatacttctgagcagactacagttttttttagtgaaagatccccttttggattct
gaaggacagtttttaacagcagagaatattttcagagaatgtttgactttccaaaatgga
atgaagatggaagaaagtcaaaatgatttgcaggggattaaagagaatttctgtactgta
tctataaaagatgaagagtatttcctgttgcctgttgatttagaattgagcaaacttaag
agtggcagatctgtggcagttccatcatacttggaactaaaggaggtgttaaatttagct
ccagtcactgtagatgatgaagacctttgcaaacaagtgatcagagaagatctcaaagca
gaaattacatgcaaaatagaaatttccaagtactgtgccattccacaagaggtttgctcc
agtattagcacaagtatgttggaattctgtgagtcagctgaatatattccatatttgaaa
gatgaaatggaagtgcctttaactcctccatgcagacaacaaagatcatgggttaatttt
ccgtgcagaggacttcaagaagaacctatttctctctctggtaacagtattttgattgca
gagccctctagggaattcttagaatctttggtatggcaatcagagaagtatcgggataat
atgagctctcttttgcttgtcgagcatccagctgttaaccttgcacatcagcatcattca
ctgagagatctgcagaagaaactgctgcttgaggttgaagcaccaatgcttggctcacta
gaggagggctggtggcttcatagagttttaaatccagcagctgtagaaattttggaacaa
ttcaatatggatggaagtaatgcaaacagtctacttccaacagaagtagaaacattcaca
caatttacaacatataaattagaaagatggcttgaggagaagaattgtgtgacaaaccaa
gagctgctttctgctgaaggacattcatcagagaaagtagttaatcctgacttgtcactg
cagattcaaaggcagaactttgctgtgagtgctctgtcacctgccaaaattcacagtaca
aatacatctatagcagagcttactggaggaagcataagcaagattaagacagaagaggca
atttacttcttaaaccaagaaaagaaaacccccgaaccatttgaatcagacagctgtaaa
gatgtgtcttctaaactagacaaatcatcctgtagtggaaagcctgcatctcttgcactt
gcttctaaatgggccaacgatgattctgatctgaacaacttcattatgatgagatctaaa
tatacagtcacccaaagagaggacaaatattatgtagataggcctgaaaaagtggtacag
cctgaagatcagcatatcaatattctcaaagaggacaattctttttgtgagactgtaaaa
acagaggaaaacacccaagagaataaagacagtatcactatcaatattcagccatcagaa
agccaatgccaggcatactgcctcttggaagaagcagctattcctgtactaaaagatttg
acacacctgggtgtacttgcttctgttacttggagctttggcagtgttaaaattgatcat
acaagatttttcttgaaacaacaagagaaagtgatatatgataattttaaacaaggtaaa
gtagacgagaaggagatcctgctgttcagacatgctgctctggtacacgtgctggtgaca
gttcgagatctgctactaacatgtggctgggatacagctttaggttatttgtccaaggca
aaggatatctacaaaaacattttagaatcctgtttgaataatatctggaggcagctgaag
attgtacagtacagcagccagaaaaagcatgaaactcatcccaaaataacagcacttcag
tgtgaaatgttaaattggatgaaaagttgtggagagaaacacagtgttaagatactaatc
attacaaggatggactctgaaagagaaaaagatgccttcattcacccattatctaggata
gaaggtttgaaagctgtggatttgaattctgagaaaaaaggaagccctttaagttgtaaa
gagatcataagcaatcttagtagatattcctgcattattgtacataatcagcaaattcga
gctgacttcccttggacacacttctcactagtaatggagtatgattattctgaaaattct
ggctggaaaaatctgtgcaaaaatctgaatgttacttacatgacttttaaaacgaccttc
cctgaaacaagacgaatggggaatcatggtggttcctttcttctggaagtacagattcca
tatgtatttctgacaactgaaggtcttcttaatatgccagatattcttcagctttttgaa
tccaagtacagcattacctttgttgaaagaagcagcagttactccttaaggctctttgga
agtgcagatcaatatgttgtgctgacagtagatgaatgcactgctatctttctgcagagt
gtcgaagaactaaattatgaggactcctgtgacactgtaatatcaaggctgatggcatta
tcactccaatatatgtgctgttggattattttctattccaaagaaagactgagtttagag
tacagtctcaagggaaatactctgcttaatcttgtcttaatttatgccactctaattgaa
cttacacagaagtcagaagactttgaagtgaaggtagttcttacgccagggattgaagag
acagcactggtaattcgtcagattgctgacaacgttttgatagcatctaatatcagccct
catgagtggctggacaaatcctggctttctatcttaccatctgagccagagaaatgcctg
cttacttttccatgtattaatcctttggttgcccagtttatgttaaagaagggatcatca
ctgaacagattatttcttgcaaactttgatcaactccaggaactactgccacaggctcca
aaaaaagttttaaagcatttcagtgacatgatatcttcatacagcctaaatgctgctgct
ctagaaaaaacagtgaaaggtgcatcacacccagaaaaccagaataaagtcaacacattg
tatcttgataataaacaaaattgtcagattttagagctaccaggaccatcttgtatgaat
gctgaagccctaaatcctccactgaattatcataagggttttttaaagtctgatcttcca
agttgtatgcaaaagaaagcgtgctcgtcagatgtaattacaaggagaaagctgaatttc
tttgctgtatcaaaggacaatgaagattttgctcatccagaagttaaaaattctctccat
gttcaaagacagcctttcagaatgcataatagctctgatcattcttccaaagactctgaa
aaacaggatttctttgcagctttcagtgactgtgcacctcaggagagctctaagagtttt
ctagatgaatttagagacacaacatttaaaagcccagaaattcagatcgaccagtccctg
tggaatgattcttcatccacaggcccacataattcatttgctcacgatggttttctatct
gatttctttgatgatacgaatgagcttcaaaatctgaattttagtcaaataggtgaaaca
cctaaaggaaagaggaaaaaaaggcctccattcttatggacaaaggaaaaaattaaaaca
gattcaggatttccagaactgcaggagttcaaaaaaaggaaattgacatatgaaagagtc
cctggaagaagagatggacaaacacgtcttaaattcttttcagcaaaatga
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