Zonotrichia leucophrys gambelii (white-crowned sparrow): 135460143
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Entry
135460143 CDS
T09958
Symbol
VPS13A
Name
(RefSeq) intermembrane lipid transfer protein VPS13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zle04131
]
135460143 (VPS13A)
Membrane trafficking [BR:
zle04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
135460143 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Spo16_N
Motif
Other DBs
NCBI-GeneID:
135460143
NCBI-ProteinID:
XP_064592883
LinkDB
All DBs
Position
Z:46217984..46327664
Genome browser
AA seq
3208 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGAVALKNLEIKENALSQLDVPFKVKAG
HISQLNLQIPWQNLYTQPVEAVLDGVYLLIVPTATIKYDAEKEAKHFLEARQRELQRIEE
AKQKIADQDKVKEEKQDTFVEKLVTQVIKNLQLKISNIHIRYEDDITNRDNPLSFGISLQ
NLSMQTSDKNWNPCLHDETAKLFHKLVRLDNLFAYWNVKSEMFYHGGWDESLVNLKQGVA
SHNMIPDGYDFVFRPISAKAKLLMNPRSDVDFSSPKIDLDVNLQDITVEFNKPQYFSVME
LLESIDMMTRNLPYRKYRPDVPVHNNAKTWWKYVIDGILKVNVQPKLQMWSWEHISHHRK
QVKNYKELYKTKITSKKPNEEILKLLEEFEKTLDIFNITLARQQAEVEAAKAGLKIYRPG
VKQDDENSGGWFSWIWSWSGGKKDEKSQEVKGSSLEQLMTQEEKAKLYAAIGYSETAVDP
TLPKSYEAMKFSVNLLSMSISIRENTQAPQLIEFALTDLSTVFTQRPGAQAIRFETKIAS
LEVTGVSQEKCTPRLLSSRTAYSDDNTSLLSIMFETNPLDEKADQRIRIESQPLEIVYDA
MTVNNLVDFFRPPKDVHLEQLTSATLMKLEEFREKTSTGLLYIIETQKILDLKINLMASY
IIVPQKGFYDHTSNLLLLDLGSFKMASKSRSDLSKIKAGKTSIEDIMSRAYDSFDVQLSS
MQLLYSKHDENWREARKLKNSSQCILQPLDVNLEFSRAMVVTDARMPRFKLSGQLPLLSI
QISDQKVTSILELIDSIPKPESVPATSSPPKMTEATLSPVLPAPHSSQGVYSVLDLHSFP
ESESEEEFYDALSSPVEDVPFFEVSSSPLKQTVSTRRKNLHKQESLKNMTDFQLKFEVAQ
VLIKLCRLTGDTEMPVLQLDILGLGTELKVRTFDMTGSAFLREVCLLCPEYIDDNDKPVY
IITTLDNVEDDLLTLEYTKTDIKGPELKTVCQNVLQKIKVNFSSLDVHLHTEALLNAMNY
LSNLLPKQETKVVEEPVYEKTEEKKDVLKKFTSKKSKYEDIIDLIICADLSCLRIFIGEE
NRRIAEIHIEGLDSQVIMKKAATDVTAKLKNITIVDSDEKALYKKALYITEKEVFNFRMV
SYVNATDGIAYTNMDVVDNRIYLTVGCIQVVFVNKFVTSVLAFINNFQAAKEAFTEATVR
TAEKAATGVKGLAERSSRLALDINIKAPVVIIPQSAMSANVLVADLGLITVKNQFFIAKT
KIRCTLPPVIDSMTVKLSELKLYRSYYEQGSLQTEVQLLQPINLEVAVERNLAAAWYHEV
PDIEISGRLKPMNLILSQEDITTILRTLNENAGESSGASTALPESKASASRSSEMHGTSQ
QSAGVTVVTSAVVELHSPMKIKTTLKLDFRFDSLTLVLYSPNSKQVNSLDQRDDLLKLAE
FKLVLMSAALKMLSDGSMNASVKLANCTLDDKRQSIQKATPRMVEMKRGFEKKVMVDVNY
KQGRDGTALDVIVQEIYLCASMEFLLTVADIFLKANAESAAQRNLKQQSLPVKDQASVQP
VSTMEMNIVVKNPEIVFVADLTRSDAPALVVTTQCEVFIKNSPERYNMTAAVREIQMKAC
PFLPEERKGSITTVLQPCDLFFEMKQSGTSPQTADLTIKSLTIEVSPIIINTVITITSAL
YQTTETTKEEISQIPPDLWNKKDIKNLKMWFLEETNENGDKNPKTELVPTGESLKLNIES
VFITLEAGVGHRTVPMLLAKSSFAGEVKNWSTLINLHSRLELEVHYFNEMFGVWEPLLEP
LEVEKTDLFRPWTLEIKMKKAKKVLFESDDEEEENYKVPEYKTVINVSSKDQLNITLSKL
GLQMLSNLGTAFAEAASQTSDVFKKERAPFVIINSLGVPITVLPSDSFSVLNVEFGSKIF
HLEDKESLNMDFVRSRSESDQFTAMTTLSSKRFYIQICPHNHSAVEKIPLTKVGRCIYKV
RHEESGVERSIVSQIDTVEGSKMITIRSPIQIRNHFSIPLNVFEEGRCLGTASPANEFNI
PFSSYRSVLSLQPLANENGVGAEFDMCEGITFDEIMKNVDSLLQRKCQSVKSTNHSLIIN
IVPVKDALTTSLGAEDEWDFPYVVHLWPSVLLRNLLPYQITYSVEGNGNKYDTLQEGCSA
QIHNAVLDQTKLGLQLLNYLDQDWRSEYLIKSNLPDISFTTFQCVTELDKTELDIAVHVT
YTTGQMVIEIHSPYWMVNKTGRMLQYKADGIHRKHPPDYKKPLLFSFQPKNFLQNNKAQL
RVTDSELSDPFSLDTVGSHGSVKCKSHKKEYQVGITINNSSFNITRIVTFTPFFMISNRS
NYTLEVAEEGKEKWIPIVLQQWCEKQWERELSGMCIPFWPESDANKLLVRVENSDLPPKK
INFDQQENCLLLHLDNKLGGIAVDVNLTEHSTVITFSNYYAGAAPFLLINHTKEEIIEYG
QSSLSELEDCLQPNKAVLYTWADPTGSKKLKWRCGNRTEEIAAKEDKMEVLNVDSRKVVY
LMSFYEGLQRIVLFTEDENVFKLTYESVKAELAEQEIVLSLQDVGISLVNNYTKQEVSYI
GITSSDVVWETKPKKKSRWRPMSVKQIDKLEQEFRDYSELSPSENKIIELESNVLVCLTP
NGMNMTIQQPNEIPIRRNYLPALKVEYSSSAHQKSFRIQIYRIQIQNQIPGAIFPFVFYP
IKPPKSITLDSAPKPFTDVSIVMRTAGHSEITHIKYFKVLIQEMDLRLDLGFLYAVGEFF
TQTDVPSDQELQLFEKDVESLQEELMSVSSMDTSQISLYEYFHISPIKLHLSFSLSEGGE
DSNKEERKNELIPFQSLNLLLKSIGATLTDVQDIVFKLAFFELRYDFCTTQQLQSSVIRH
YSKQAIKQMYILILGLDVLGNPFGFIRGLSEGVEAFFYEPYQGAIQGPEEFIEGMALGFK
ALVGGAVGGLAGAASRITGAMAKGVAAITMDEDYQQKRREAMNKQPTGLREGITRGGKGL
VSGFVSGITGIVTKPIRGAQEEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKKV
ADSSEDVISLRPPRFFNEDGVIRPYRLRDGTGSQMLQKIENGRFAKLRYIAHAMVNSTDL
LMVTKSGVLFVTKGAFGQLTCEWQYTYDEFTKEPFIVDGRRLRIEAKERVKSVFHAKEFG
KIINFRSPEDAKWILSKLEEVRENQPKL
NT seq
9627 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtccctggtcgtggacgtcctgaaccgtttccttggcgactacgtggtg
aacctggacagctcccagctgaagctgggcatctggggaggagctgtagcactgaaaaat
ctggaaataaaagaaaatgcactgagtcagttggatgtgccatttaaagttaaagcagga
catattagtcagcttaacctacagattccatggcaaaacctttatactcaacctgttgag
gcagtccttgatggagtttatttgcttattgtgcccacagccaccataaaatatgatgct
gaaaaagaagccaagcacttcctggaagcaagacaaagggaattgcagagaatagaagaa
gcaaagcagaagatagctgaccaagataaagtaaaagaagagaaacaagacacttttgta
gaaaagctagttactcaggtcatcaaaaatcttcagctgaaaatttccaacatccatatt
cgctatgaagacgatatcacaaatcgtgataaccccttgtcatttgggatttcacttcag
aatctaagtatgcagacctcagataagaattggaatccttgtttacatgatgaaactgcc
aagttgttccacaagcttgtgcgactggataacctttttgcttattggaatgtgaaatca
gaaatgttttaccatggtggctgggatgaatcattggttaacttaaaacagggagttgcc
agccacaacatgattccagatggttatgattttgtattccgccccatttcagctaaagcc
aagctccttatgaatcctcgatccgatgttgacttttcatcaccgaaaatagatctagat
gtaaacttacaggatataactgttgaattcaataagccacagtacttcagtgttatggag
cttcttgagtctattgatatgatgactcgaaatctgccatataggaagtacagacctgat
gttccagtgcacaacaatgccaagacatggtggaaatatgttattgatggcatccttaaa
gtaaatgttcaacctaaactccaaatgtggtcatgggaacatatttcacatcatagaaag
caagtgaagaactataaagagttgtataaaacaaagataacatcaaaaaaacctaatgaa
gaaatcttgaagttgttggaggaatttgaaaagaccttggatatttttaacatcacttta
gcaaggcagcaagcagaagttgaggcagccaaggctggattgaaaatctacagaccagga
gtaaaacaggatgatgaaaattctggtggctggtttagctggatatggagctggtcgggt
ggaaaaaaggatgaaaaaagccaagaagtaaagggttcaagtcttgaacagctgatgaca
caggaagagaaggctaaactttatgcagcaattggatatagtgaaacagctgtggatcca
acccttccgaaatcatatgaagccatgaagttctctgtgaacttattaagcatgtcgata
tcaataagagaaaacacgcaagctcctcagctaatagaatttgcattaactgacttgagt
acggtatttacccaacgaccaggtgcacaagcaataaggtttgaaacaaaaattgcctca
cttgaagttacaggcgtgtctcaagaaaagtgtacaccccgtctcctgtcttctcgaaca
gcctattcagatgacaatacctcacttttaagcataatgtttgagactaatcctttggat
gagaaagcagatcagaggattagaatagaatcacaaccactggaaatagtatatgatgca
atgacagtaaataacttagtggatttctttagacctccaaaagatgtacatttagagcaa
ttgacatcggcaactctgatgaagcttgaagaattcagggaaaaaacatcaacaggattg
ttgtatattattgaaacccagaaaattcttgacctcaaaataaacctcatggcttcatac
atcattgttccacaaaaaggattctatgaccatacatcaaatttactactgctggatctt
ggtagctttaaaatggcaagcaaaagtcgttctgatttatcaaaaatcaaagcagggaaa
acctcaattgaagatataatgtccagagcttatgacagttttgatgtccagctcagtagc
atgcagttactgtacagcaaacatgatgagaactggcgagaagctcggaaactgaaaaac
tcatctcagtgtatcttgcagcccttggatgtaaacctggaatttagcagggctatggtt
gttacagatgcaagaatgcccaggttcaaactgtcaggacagttgcctttactgtctatc
caaatatcagaccagaaggtgacaagtatcttggagctaattgatagcattcctaagcca
gaaagtgtgcctgctaccagttctcctccaaaaatgactgaggctacactgtcccctgtg
cttccagcaccacattcgtctcaaggcgtgtattctgttttggatcttcattcatttcct
gagtcagaatcagaagaagaattttatgatgcactaagcagtcctgtggaagatgtgcca
ttttttgaagtctcatctagccccctcaagcagactgtcagtacaaggcgaaaaaatcta
cacaaacaagaatctctgaaaaatatgacagatttccaactaaagtttgaagtagctcag
gtcttaattaaattatgccgtcttactggtgatactgagatgcctgtgcttcagcttgat
attttgggcttaggcactgaactgaaagtgagaacatttgacatgactgggagtgctttc
cttcgtgaagtttgtcttctgtgcccagagtatattgatgataatgacaagccagtttac
ataattactacattggataatgtagaagatgatcttctcactctggaatatacaaagact
gatattaagggaccagaactgaaaactgtctgtcagaatgttctacagaaaataaaggtg
aacttttcttctctagatgttcatttgcatactgaagctctgctgaatgcaatgaactat
ctgagtaatcttctgcctaaacaagaaactaaagttgtggaagaaccagtctatgaaaaa
acagaagagaagaaggatgttctaaaaaaatttacatcaaaaaaatcaaaatatgaagat
attattgacctcattatctgtgcagatttatcatgtttgcgtatttttatcggagaggaa
aaccgtagaatagctgaaattcacattgaaggtctggatagccaagtgatcatgaagaaa
gcagcaactgatgtgactgcaaaattgaagaacatcactattgtggattctgatgagaaa
gcactgtataaaaaggctctttacatcacagaaaaagaagtcttcaacttcagaatggta
tcatatgtgaatgctacggatggcattgcatatacaaatatggatgttgttgacaatcgt
atttacctaactgttgggtgtattcaagtagtttttgtcaacaagtttgttacatctgtt
ttggcttttataaataactttcaagctgccaaggaagcttttactgaggcaactgttcga
acagcagagaaagcagctacaggtgtaaaagggttagcagagcgtagttcccgtttagcg
ctggatatcaatatcaaggcacctgttgtgataattccacagtctgcaatgtctgcaaat
gtcctggtggctgatcttggtctaatcactgtgaagaaccagttctttattgctaaaaca
aaaatacgatgtactcttccacctgttattgactctatgacagtgaaattgagtgaactg
aagttgtatagatcttactatgagcaaggttctttgcaaactgaagtacagttgctgcag
ccaatcaatctggaagtagctgttgaacgaaatttagctgctgcatggtatcacgaagtt
cccgatattgaaatatctggccgactcaagcctatgaatctcattctcagtcaggaagat
attaccacaatactgaggacactaaatgaaaatgcaggtgaaagctctggtgcatcaaca
gctttgcctgaatcaaaagcatcagctagtcgttctagtgaaatgcacggtacttctcag
cagtctgcaggtgtaactgttgtgacatcagctgtggtggaattgcattcacctatgaaa
ataaaaacaacactaaaactggacttcagatttgactctctgactttagtgttgtatagt
ccaaattcaaaacaggttaacagtttggatcagagagatgaccttttgaagcttgcagag
tttaaattagttctcatgtcagctgctctaaaaatgttatcagatggttccatgaatgct
tcagtcaaactcgcaaactgtacattagatgataagagacagtccatccagaaggctaca
ccaagaatggtggaaatgaaacgtggatttgaaaaaaaagttatggtggatgtaaactac
aaacaggggagagatggcactgctcttgatgttattgttcaagagatctacctttgtgca
agcatggagtttctacttactgtagcagatatatttctaaaggctaatgcagaaagtgct
gcacaaagaaatctcaaacagcagtcattacctgtaaaggaccaagcatctgtgcagcct
gtatctacaatggaaatgaacattgttgttaaaaatccagagattgtgtttgtggctgat
ttaacaagaagtgatgctcctgcattggtggttacaacacagtgtgaggtcttcattaaa
aatagccctgaaagatacaacatgacagctgctgttagagaaatacagatgaaagcatgc
ccatttcttccggaagaaaggaaagggagcattactacggtattgcagccttgtgacttg
ttctttgaaatgaaacagtcaggtactagtccacaaacagctgatctaaccattaaatct
ctaacaatagaagtttcaccaataatcataaacacagtaattactattacatcagccctt
tatcaaactacggaaacaacgaaagaagagattagtcaaattcctcctgacttgtggaat
aagaaagatataaaaaatctgaaaatgtggtttcttgaagagactaatgaaaatggagat
aaaaatcctaagactgaactagttcccacaggagagtcattgaaacttaatatagaatct
gtttttataacacttgaagctggggttgggcacagaacagtgccaatgcttttagccaag
tcctcgtttgctggagaagtcaagaactggagtactctaatcaacctacattctcgcctt
gagctagaggtacattattttaatgagatgtttggtgtgtgggaacctttgcttgaacca
ctagaagttgagaagactgacttattcaggccctggactcttgaaatcaagatgaagaag
gctaaaaaagtgctgtttgaatcagatgatgaagaagaagagaactacaaagttccagaa
tataaaacagtaataaatgtttcctcaaaagaccagctcaacattacactgtccaagtta
ggactgcaaatgttgagtaacttgggcacggcatttgctgaagcagccagtcaaacttca
gacgtcttcaaaaaagaacgagcaccatttgtaataataaattctttaggagttcccatc
acggtcttgcctagtgattcctttagtgtccttaatgttgaatttggatcaaaaatattt
catttagaagacaaagagagtttaaatatggattttgtcagaagtagaagtgagagtgac
cagttcacagcaatgacaacactgagtagcaagagattttacattcagatatgtccacat
aatcattctgctgtggaaaagattccattgactaaagtgggtcgatgtatttacaaagtg
agacacgaggaatcaggtgttgaaaggtccatcgtcagtcaaattgacactgttgaagga
agcaagatgataactatacgttcccctattcagataaggaatcacttttcaatcccttta
aatgtttttgaagaaggaagatgtttagggactgcttcgccagcaaatgaattcaacata
cccttttcttcttacagatccgtactgagtttgcaaccactagccaatgaaaatggagtg
ggtgcagaatttgatatgtgtgaaggaattacttttgatgaaattatgaaaaatgttgac
agtttgttacaaaggaaatgccaatctgtgaagtcaactaaccactcacttatcatcaat
attgttcctgtaaaagatgcattgaccacttcattaggtgcagaagatgaatgggatttt
ccatatgttgttcatttatggccttccgttcttctccgcaatcttcttccttaccaaata
acttactctgtagagggaaatgggaacaaatatgacactctacaagaaggatgttctgcc
cagattcataatgcagtcttggaccaaacaaaactaggtttgcagttgcttaactatctt
gatcaagactggagaagcgagtatcttataaaaagcaatctacctgatatcagcttcaca
acatttcagtgtgtcacagagctggataagactgagctggatattgctgttcacgtgacc
tacacaactgggcagatggtaatagaaattcacagtccctactggatggtgaataaaact
ggtcgaatgttacaatacaaagcggatggtattcaccgcaagcatcctccagattacaaa
aagcccctccttttttctttccagcctaaaaacttccttcaaaataacaaggcgcagctt
cgggtaactgacagtgaactgtctgatccattttcactggacactgttggaagtcatggt
tctgtgaaatgcaagagtcataaaaaggaatatcaagttggtatcaccataaacaatagc
agtttcaatattaccagaattgtaaccttcactccattttttatgatttcaaacagaagt
aattacactttggaagtagctgaagagggcaaggaaaagtggattcccattgttttgcaa
cagtggtgtgagaaacaatgggaaagggaacttagtggcatgtgcattcctttttggcct
gaaagtgatgccaacaaactgcttgttagagttgaaaattctgatctccctccaaagaag
ataaattttgatcagcaagaaaactgtcttttactgcatttggacaataagcttggagga
attgcagtggatgttaatctgactgaacattctacggtgattaccttttctaattactat
gctggtgcagctccatttctgttgataaaccataccaaagaggaaattattgagtatgga
caaagctccctcagtgaattggaagactgccttcagccaaataaggcagtgttgtatact
tgggcagacccaacaggatctaagaaattaaaatggagatgtggaaatagaaccgaggaa
attgctgcaaaagaggacaaaatggaagtactcaatgtggattctagaaaagtggtctac
ttaatgtcgttttatgaaggtttgcaacgtattgtcctgttcactgaagatgagaatgta
tttaaattgacatatgaaagtgtaaaagcagaactagcagaacaagaaattgttctgtct
ttgcaagatgttggaatttcattggttaataattatacaaaacaagaggtgtcctacatt
ggaattacaagttctgatgtggtgtgggagacaaaacccaagaagaagtcgagatggaga
ccaatgagtgtcaagcaaattgataaattagaacaagaattcagagattacagtgagcta
agcccttcagaaaataagattattgagttggaatcgaatgttttggtatgtttaactcct
aatggaatgaacatgacaattcaacagccaaatgagattcctatcagaagaaattatctg
ccagctttaaaagtggaatacagctcctctgcacatcagaagtctttccgaattcaaatt
tacaggatacaaatacaaaaccagattcctggagccatatttccctttgtgttctatcct
attaaacctccaaagtccatcaccttggattcagcacctaaaccatttactgatgtcagt
attgtcatgagaactgcaggacactcagaaataacacatattaagtactttaaggttctg
attcaagagatggatctcagattagatcttggcttcctgtatgcagtaggtgaattcttt
acacagactgatgtaccaagtgaccaagagctacaacttttcgaaaaggatgttgaatct
cttcaagaagagctaatgagcgtgtcgtcaatggatacatcacaaatcagcttgtacgaa
tacttccacatctctccaattaagttacacctgagcttttcactcagcgagggtggagaa
gatagtaacaaagaagaaagaaagaatgaattgataccatttcagtccttgaatctcctg
ctgaagagtataggggccacccttacagatgtacaagatattgtctttaagttggcattc
tttgagctcaggtatgacttctgtactacgcagcagcttcaatcatcagttataaggcat
tattcaaaacaggctattaaacagatgtatattcttattcttggccttgatgtgttgggt
aatccatttggattcataagaggcttgtctgaaggggtagaagcttttttctatgaacca
tatcagggagccatccagggtcctgaggaatttatagagggaatggcactaggatttaaa
gcgctggtggggggagctgttggtggattagcaggagctgcctcaagaatcacaggtgct
atggcaaaaggagtagctgcaataactatggatgaagattaccagcaaaaaaggagagaa
gccatgaacaaacaacccactggtctgagagagggtatcactcgaggtggaaaaggactg
gtttctggttttgtcagtggcataacaggaatagttacaaaaccaataagaggagctcag
gaagaaggagcagccggttttttcaaaggtgttggaaaaggcttagttggagcagtagcc
aggcccactggtggaatcatagatatggcaagcagcacatttcagggtattaaaaaggtt
gcagattcatcagaagatgtgataagcctgcgaccacctcgcttttttaatgaagatgga
gttattagaccttacagattaagagatggaactggaagtcaaatgttacagaaaattgaa
aatggaagatttgcaaaactcagatatattgcacatgctatggtcaacagtacagatctg
ttaatggtaacaaaaagtggtgtgttatttgtgacaaagggggcatttggacagctgaca
tgtgaatggcaatacacttatgatgaatttaccaaagaaccattcatcgttgatggtcga
agattgcgcattgaagccaaggaacgagttaagtctgtcttccatgccaaagaatttgga
aaaattattaattttagaagtccagaggatgctaagtggatcctttccaaactagaagaa
gtacgagagaatcagccaaaattgtaa
DBGET
integrated database retrieval system
