Zonotrichia leucophrys gambelii (white-crowned sparrow): 135460177
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Entry
135460177 CDS
T09958
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135460177 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135460177 (MTREX)
03041 Spliceosome [BR:
zle03041
]
135460177 (MTREX)
03009 Ribosome biogenesis [BR:
zle03009
]
135460177 (MTREX)
03016 Transfer RNA biogenesis [BR:
zle03016
]
135460177 (MTREX)
Enzymes [BR:
zle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135460177 (MTREX)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
135460177 (MTREX)
Spliceosome [BR:
zle03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
135460177 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
135460177 (MTREX)
Ribosome biogenesis [BR:
zle03009
]
Eukaryotic type
Pre-60S particles
Helicases
135460177 (MTREX)
Transfer RNA biogenesis [BR:
zle03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
135460177 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
135460177
NCBI-ProteinID:
XP_064592977
LinkDB
All DBs
Position
Z:29048850..29091363
Genome browser
AA seq
984 aa
AA seq
DB search
MAEAFGDELFSVFEEDAAAAAAGAKKSKTVPAEGARRPGKRLEEKPSVPATIVKPKREAE
IDSTENVILGKKPKLEDVLSDDVNLTDLMPQVKVQSVETVEGCTHEVALPANEEFTGLKP
RTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIF
TSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVA
WVIFDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVI
YTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNA
IDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNN
LEAQYNKIVIPNEENVVIYYRIRQQLAKLGKDIEEYIHKPKYCLPFLQPGRLVKVKNEGD
DYGWGVVVNFSKKSNVKPNSSELDPLYVVEVLLHCSKDSLKNSATESAKPARPDERGEMQ
VVPVLVHLVSAISSIRLYIPKDLRPIDNRQSVLKSVLEVQRRFPDGVPLLDPIDDMGIKD
QGLKKVIQKIEAFEHRMYSHPLHNDPNLETIYKLCEKKAQIAMDIKVAKRELKKARTVLQ
MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATA
LLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLETDEENYLNSFRPNLM
DVVYTWANGANFAHICKMTDVFEG
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcctttggggatgagctcttcagcgtgttcgaggaggacgcggccgccgct
gctgctggcgccaagaagagcaaaacggtccccgccgagggtgccaggaggccggggaaa
agattggaagaaaaaccttcagtaccagccacaatagtcaaaccaaaaagggaggctgag
attgatagtactgaaaatgtcattttggggaaaaagccgaaattggaagatgttttatca
gatgatgttaatctgacagatctgatgcctcaggtaaaggtgcagtctgtggaaactgtt
gaaggttgtacgcatgaggttgcgcttccagcaaatgaagaattcacaggtctgaagcca
agaactggaaaagctgcaaaggagtatccgtttattcttgatgccttccagagagaagct
attctttgtgtagataataaccagtctgtgttggtgtcagctcacacatcagctggtaaa
actgtttgtgctgagtatgcgattgccctggctttgagggaaaagcagcgtgtgatattt
acaagtccaattaaagctttgagtaaccagaagtaccgtgagatgtatgaagaatttcag
gatgttggtttgatgactggggatgtcaccattaatcctacagcttcttgtttggtaatg
acaactgagatcttgagaagtatgctttacagaggttctgaggttatgcgtgaagtcgca
tgggttatttttgatgaaattcactacatgagagatacagaacgtggtgtggtttgggaa
gagactattattttgcttcctgataatgtacattatgtattcctttctgcaactattcca
aatgcccgtcagtttgctgaatggatctgccatcttcacaaacaaccttgccatgtgatt
tacactgactatcgacctactccactgcaacattatatatttccagcaggaggagatgga
ctccatctggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatg
caagtgcttagagatgcaggagacttagcaaaaggggatcagaaaggaaggaaaggagga
acaaaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaa
cctgtgattattttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgaca
aagttagatttcaatacagatgaagaaaaaaaaatggttgaagaagtcttcaataatgca
attgattgtctctcagatgaagacaaaaagcttcctcaggttgaacatgtgcttcccctt
ctgaagcgaggaattggtattcatcatggtggtttgcttcctatattaaaagaaaccata
gaaatccttttctcagagggcctaataaaggccttatttgcaacagagacttttgctatg
ggaattaatatgccagccagaactgtgctgtttacaagtgccagtaaatttgatggaaaa
gatttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgtgcgggacgccgt
ggtatggatgacagaggaatagtaattcttatggtggatgaaaagatgagtccaaccatt
ggcaagcagcttttgaagggttcagctgatcccttaaacagtgctttccacctgacatac
aacatggtattgaacttacttcgagtggaggaaattaaccctgaatacatgttagaaaaa
tcattttatcagttccagcattacagaactattccagaaatagtggaaagagtcaataat
ttggaagcacagtacaacaaaattgtaattcccaatgaagaaaatgtggtgatatactac
agaatccgccagcagcttgcaaaactgggtaaagatattgaagagtatattcacaagcca
aagtactgcttgccctttctacagccaggaagactagtaaaggtgaagaatgaaggtgat
gactacggatggggagtggttgttaatttctctaagaaatcaaatgttaagccaaattcc
agtgaattggacccattgtatgtagtcgaagtgctcctgcactgcagcaaagacagtttg
aaaaattctgctactgagtctgcaaagccagccagacctgatgagagaggagagatgcag
gttgttcctgttttggtgcatcttgtctcagctatcagcagtatccgcctgtacatacca
aaagacctgaggcctattgataacaggcaaagtgtgttaaaatctgtactggaggtacag
agacgttttcctgatggagtacccttactagatcctattgatgacatgggcatcaaggac
caagggttgaaaaaagtaatacaaaaaatagaggcatttgagcataggatgtattcacat
cctcttcacaacgatccaaacttggaaaccatatacaaactttgtgaaaaaaaagcacag
attgctatggatattaaagtagcaaagcgagaattgaagaaagccagaactgtcctgcaa
atggatgaactcaaatgccgcaagcgtgttttgagaagactggggtttgccacgtcttca
gatgttattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactactc
ctgacggaaatgatgttcaatggtctcttcaatgatttgtctgcagagcaggcaactgca
ctactcagctgtttcgtgtttcaagagaattccagtgaaatgccaaaactgactgaacag
ttggcaggaccacttcggcaaatgcaggagtgtgcaaaaagaattgccaaggtgtcagca
gaagcaaaactggaaactgatgaagaaaattacttgaattctttcagacccaacctaatg
gatgttgtgtatacatgggcaaatggagctaactttgctcacatctgcaaaatgacagat
gtctttgaaggctga
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