Zonotrichia leucophrys gambelii (white-crowned sparrow): 135460547
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Entry
135460547 CDS
T09958
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03020
RNA polymerase
zle03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
135460547 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
135460547 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zle03021
]
135460547 (POLR2A)
03400 DNA repair and recombination proteins [BR:
zle03400
]
135460547 (POLR2A)
Enzymes [BR:
zle01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
135460547 (POLR2A)
Transcription machinery [BR:
zle03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
135460547 (POLR2A)
DNA repair and recombination proteins [BR:
zle03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
135460547 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
135460547
NCBI-ProteinID:
XP_064593492
LinkDB
All DBs
Position
Unknown
AA seq
1969 aa
AA seq
DB search
MHGGPPSGDSACPLRTIKRVQFGILSPDEMKRMSVTEGGIKYPETTEGGRPKLGGLMDPR
QGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLGKTMKILRCVCFFCSKLLVDS
NNPKIKDILGKSKGQPKKRLTHVYDLCKGKNICEGGEEMDHKFGVEQPEGDDDLAKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMDPK
FARPEWMVCTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLAIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIR
DNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWST
FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
CIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMG
HDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV
EFQNLATLKPSNKAFEKKFKFDYTNERALRRTLQEELVKDILSNAHIQNELEREFDRMRE
DREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINSRLPSDLHPVKVVEGVKELSRKLV
IVNGEDPLSRQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGEIESKFNQAIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTV
FLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPD
FDVSRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LYHVISFDGSYVNYRHLALLCDTMTSRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLME
AAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKHGMEIPSALPGLGVGGPTGM
FFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGGAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTS
PSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYS
PTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSP
KYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDDDN
NT seq
5910 nt
NT seq
+upstream
nt +downstream
nt
atgcacggcggtccgccctcgggcgacagcgcctgcccgctgcgcaccatcaaacgagtc
cagttcgggatcctcagccccgatgagatgaaacggatgtcggtgaccgaggggggcatc
aagtaccccgaaaccaccgagggggggcgccccaaactcggggggctgatggacccccgg
cagggcgtgatcgagagaacggggcgctgccagacctgtgccgggaacatgacggagtgt
cccggtcactttggccacatcgagctggccaagcccgtgttccacgttggctttttgggg
aaaaccatgaaaatcctgcgctgtgtctgcttcttctgctccaagctgctcgtggactcg
aacaaccccaagatcaaggacatcctgggcaagtccaaggggcagcccaagaagcgcctc
acgcacgtctacgacctctgcaagggcaagaacatctgcgagggcggcgaggagatggac
cacaagttcggcgtggagcagcccgagggcgacgacgacctcgccaaggagaagggccat
ggtgggtgcgggcggtaccagccgcgcatccgccgctcggggctggagctctacgccgaa
tggaaacacgtcaacgaggactctcaggagaagaagatcctgctgagccccgagcgcgtg
cacgagatcttcaagcgcatctcggacgaggagtgcttcgtgctgggcatggaccccaag
ttcgcgcggcccgagtggatggtgtgcacggtgctgccggtgccgccgctgtccgtgcgc
ccggccgtggtcatgcaggggtcagctcgcaaccaggatgacctgacccacaagctggcc
gacatcgtcaagatcaacaaccaactgcggcgcaacgagcagaacggggcggccgcgcac
gtcatcgccgaggacgtcaaactgctgcagttccacgtggccaccatggtggacaacgag
ctgcccggcctgccccgggccatgcagaagtcggggcgccccctcaagtcgctgaagcag
cggctgaaggggaaggagggtcgggtccggggcaacctcatgggcaaacgcgtcgacttc
tcggcgcgcacggtcatcacgcccgaccccaacctggccatcgaccaggtgggcgtcccg
cgctccatcgccgccaacatgacctttgctgagatcgtcacgcccttcaacatcgacagg
ctgcaggagctggtgcgcagggggaacagtcagtacccgggggccaagtacatcatccgg
gacaacggcgaccggatcgacctgcgcttccaccccaagcccagcgacctccacctgcag
atcgggtacaaggtggagcgtcacatgtgcgacggcgacatcgtcatcttcaaccggcag
cccaccctgcacaagatgtccatgatgggccaccgggtcaggatcctgccctggtccacc
ttcaggctcaacctcagtgtcaccacgccctacaacgccgatttcgacggcgacgagatg
aacctgcacctgccgcagtctctggagacgcgggcggagatccaggagctggccatggtg
cccaggatgatcgtcaccccccagagcaaccggcccgtcatgggcatcgtgcaggacacg
ctgacggccgtgcgcaagttcaccaagagggacgtcttcctcgagaggggcgaggtgatg
aacctgctgatgttcctgtccacgtgggacggcaaggtgccccagccggccatcctgaag
ccgcggccgctgtggacgggcaagcagatcttctcgctcatcatccccggccacatcaac
tgcatccgcacgcacagcacgcaccccgacgacgaggacagcggcccctacaagcacatc
tcgcccggggacaccaaggtgatcgtggagaacggggagctcatcatgggcatcctctgc
aagaagtccctggggacgtcggccgggtcgctggtgcacatctcctacctggagatgggc
cacgacaccacgcgcctcttctacagcaacatccagacggtcatcaacaactggctgctc
atcgagggtcacaccatcggcattggagactccatcgccgacgccaagacctaccaggac
atccagaacaccatcaagaaggccaagcaggacgtgatcgaggtgatcgagaaggcgcac
aacaacgagctggagcccacgcccgggaacacgctgcgccagaccttcgagaaccaggtg
aaccggatcctcaacgacgcgcgcgacaagaccggctcctcggcgcagaagtccctgtcc
gagtacaacaacttcaagtccatggtggtgtcgggggccaagggctccaagatcaacatc
tcccaggtcatcgcggtggtggggcagcagaacgtggagggcaagcggatcccgttcggc
ttcaagcaccgcacgctgccgcacttcatcaaggacgactacggccccgagagccgcggc
ttcgtggagaactcgtacctggccgggctcacccccaccgagttcttcttccacgccatg
ggcggccgcgaggggctcattgatacggccgtgaaaacggctgagaccgggtacatccag
cggcggctgatcaagtccatggagtcggtgatggtcaagtacgacgccacggtgaggaac
tccatcaaccaggtggtgcagctgcgctacggcgaggacgggctggccggcgagagcgtc
gagttccagaacctggccacgctcaagccctccaacaaggccttcgagaagaagttcaag
tttgactacaccaacgagcgggcgctgcgccggacgctgcaggaggagctggtcaaggac
atcctgtccaacgcccacatccagaacgagctggagcgcgagttcgaccgcatgcgcgag
gacagggaggtgctcagggtcatcttccccaccggggacagcaaggtggtgctcccctgt
aacctgctccgcatgatctggaacgcgcagaagattttccacatcaactcccggctgccc
tcggacctgcacccggtcaaggtggtcgagggggtgaaggagctgagccgcaagctggtg
atcgtgaatggggaggacccgctgagccggcaggcgcaggagaacgccacgctgctcttc
aacatccacctgcgctccacgctctgcagccgccgcatggtggaggagttccggctcagc
ggggaggccttcgactggctgctgggggagatcgagtccaagttcaaccaggccatcgcg
caccctggtgagatggtgggcgccctggccgcgcagtcgctgggcgagccggccacgcag
atgaccctcaacacgttccactacgcgggcgtgtcggccaagaacgtcacgctgggcgtg
ccgcgcctcaaggagctcatcaacatctccaagaagcccaagacgccgtcgctgacggtg
ttcctgctgggccagagcgcccgcgacgccgagcgcgccaaggacatcctgtgccgcctg
gagcacaccacgctgcgcaaggtgacggccaacaccgccatctactacgaccccaacccg
cagagcacggtggtggccgaggaccaggagtgggtcaacgtctactacgagatgcccgac
ttcgacgtgagccgcatctcgccgtggctgctgcgcgtcgagctcgaccgcaagcacatg
accgaccgcaagctgaccatggagcagatcgccgagaagatcaacgccggcttcggtgac
gacctcaactgcatcttcaacgacgacaacgccgagaagctggtgctgcgcatccgcatc
atgaacagcgacgagaacaagatgcaggaggaggaggaggtggtggacaagatggacgac
gacgtcttcctgcgctgcatcgagtccaacatgctgacggacatgacgctgcagggcatc
gagcagatcagcaaggtgtacatgcacctgccgcagacggacaacaagaagaagatcatc
atcaccgaggacggcgagttcaaggctctgcaggagtggatcctggagactgacggcgtc
agcctgatgcgggtgctgagcgagaaggacgtggaccccgtgcgcaccacgtccaacgac
atcgtggagatcttcaccgtgctgggcatcgaggccgtgcgcaaggcgctggagcgggag
ctctaccacgtcatctccttcgacggctcctacgtcaactaccggcacctggcgctgctg
tgcgacaccatgacctcccgcgggcacctgatggccatcacccggcacggcgtcaaccgc
caggacaccgggccgctcatgaagtgctccttcgaggagacggtcgatgtcctgatggag
gcggccgcccacggcgagagcgaccccatgaagggcgtgtccgagaacatcatgctgggc
cagctggccccggccggcaccggctgcttcgacctcctgctggacgccgagaagtgcaag
cacggcatggagatccccagcgccctgcccgggctcggcgtcggcggccccaccgggatg
ttcttcggctcggcccccagccccatgggggggatgtccccggccatgaccccctggaac
cagggggccaccccggcctacggagcctggtcccccagcgtgggcagcgggatgaccccg
ggcggggccgggttctcccccagcgccgcctccgacgcctccgggttcagccccggttac
tccccggcctggtcaccgacccccggctcgccggggtcaccggggccctccagcccctac
atcccctcccccggtggcgccatgtcccccagctacagcccgacgtcccccgcctacgag
ccgcggtcgccggggggctacaccccccagagccccagctacagccccacgtcccccagc
tacagcccaacctcaccgagctacagccccacctcgcccaactacagccccacctcgccc
agctacagccccacctctcccagttacagccccacctcgcccagttacagcccgacctcg
cccagctacagccccacgtccccgagctacagccccacgtcccccagctacagccccacc
tcgcccagctacagcccgacgtcgcccagctacagcccgacctctcccagctacagcccc
acctctcccagttacagcccgacctcgccgagctacagccccacctctcccagctacagc
cccacttcccccagttacagccccacctctcccagttacagcccgacctctcccagctac
agccccacctcgcccaactacagccccaccagccccaactacaccccgacctcccccagc
tacagccccacctctcccagttacagccccaccagccccaactacaccccgacctcgccc
aactacagccccacctctcccagctacagccccacctcccccagttacagccccacctct
cccagctacagcccgtccagcccccgctacaccccgcagtcgcccacctacacccccagc
agccccagctacagccccagcagccccagctacagccccacgtcccccaagtacaccccg
accagccccagctacagccccagctcgcccgagtacaccccgacctcgcccaagtacagc
ccgacctcgcccaagtacagccccacgtcccccaagtacagccccacctcgcccacctac
agccccaccacgcccaagtacagccccacgtcgcccacctacagccccacctcgcccgtc
tacaccccgacgtcgcccaagtacagccccacctcgcccacctacagccccacgtcgccc
aagtacagcccgacgtcgcccacctacagccccacgtcgcccaagggctccacgtacagc
cccacgtcccccggctacagccccacctcgcccacctacagcctcaccagcccggccatc
agccccgacgacagcgacgacgacaactga
DBGET
integrated database retrieval system
