Zonotrichia leucophrys gambelii (white-crowned sparrow): 135460611
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Entry
135460611 CDS
T09958
Symbol
DHX16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135460611 (DHX16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zle03041
]
135460611 (DHX16)
Enzymes [BR:
zle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135460611 (DHX16)
Spliceosome [BR:
zle03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
135460611 (DHX16)
Complex C
U4/U6.U5 tri-SnRNP related factors
135460611 (DHX16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
nSTAND3
Flavi_DEAD
PAT1
ABC_tran
Motif
Other DBs
NCBI-GeneID:
135460611
NCBI-ProteinID:
XP_064593574
LinkDB
All DBs
Position
Unknown
AA seq
1043 aa
AA seq
DB search
MAATAALERWVSGQLQELLGLSARHVPAFLVALARRSRSLEELLERLRETEALRVEEPRV
REFASQLWDKVPREAPREPPGRAAERAALELQRQNRGYRLVESDEEEGPGPAHSDHAQDE
PRPRRRHLRRRHRSESPPESPKAEPSPPPPPKPPEEPEEEWEASERERLRDLRERDAFAE
RLRRRDRDRDRDRGAKGGSKAYEEAQKRLKMAEEEQKAMIPELRKRSRREYLAKREREKL
EELEQEIQDEELLFGEEALTAPERRELSYKRRLRDLARDYKRAGAREEMERSSRYHIPEE
SRDKKIPEREEAPEEALAPRDEQRRWEEQLLGAAALRFGARDARHRHRHGRDYELLLEED
EMVQFVSAAQLEGTDPQKDVPEAVPEAERRRQSLQDARRALPIFPFRDELVAAVAQHQVL
VIEGETGSGKTTQIPQYLHEEGYTRGGLKIGVTQPRRVAAMSVAARVAVEMGTKLGNEVG
YSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIMVDEAHERTLHTDVLFGLIKD
IARFRPQLKVLVASATLDTERFSAFFDHAPVFRIPGRRFPVDIYYTKAPEADYLEACVVS
VLQIHVTQPPGDILVFLTGQEEIEACVELLQERCRRLGSRLPELLVLPIYANLPSELQAR
IFQPTPPGARKVVVATNIAETSVTIDGIVYVLDPGFCKQKSYSARTGMESLVVTPCSKAS
ANQRAGRAGRVAPGKCFRLYTAWAFQHELEETAVPEIQRADLGALVLLLKSLGINDLIHF
DFLDPPPHETLVLALEQLYALGALNHLGELTTLGRRMAELPVEPMLAKMILASEQYGCTE
EVLTVAAMLSVNNAVFYRPKDKVLHADSARVAFTVPGGDHLVLLNVYNQWVASGHSLQWC
YEHFVQARSLRRARDVREQLQGLMERVEIAPSSCGGNLDLVRKAITAGFFYHTARLARGG
YRTVKHQQPVFIHPNSALFSLQPRWVLYHELVCTSKEFMRQVIEIDSSWLLEVAPHYYQA
KELEDGSGRKMPKKAGKSREELG
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggcggccacggcggccctggagcgctgggtgtccgggcagctgcaggagctgctgggc
ctcagcgcccgccatgtccccgctttcctggtggcgctggcgcggcgcagccggagcctg
gaggagctgctggagcggctgcgcgagaccgaggccctgcgcgtggaggagccgcgcgtg
cgcgagttcgcgagccagctgtgggacaaggtgccccgagaagccccccgggagccccca
gggcgcgcggccgagcgggcggcgctggagctgcagcgccagaaccgcggctaccgattg
gtcgagagcgacgaggaggaggggcctggccccgcccacagcgaccacgcccaggacgag
ccacgcccccgacggcgacacctgaggcgacgtcaccgctccgagtccccccctgagagc
cccaaggcagagccctcgcccccaccgccccccaagccccccgaggagccggaggaggag
tgggaggcatcggagcgggagcggctgcgggacctgcgcgagcgcgacgccttcgccgag
cgcctgcggcggcgcgaccgcgaccgggaccgcgaccggggggccaagggcggctccaag
gcctacgaagaagcccaaaaacgcctcaaaatggccgaggaggagcagaaagccatgatc
ccggagctgcggaagcgctcccgccgcgagtacctggccaagcgggagcgggagaagctg
gaggagctggagcaggagatccaggacgaggagctgctgttcggggaggaggcgctgacg
gcgcccgagcggcgcgagctgagctacaaacggcgcctgcgcgacctcgcccgcgactac
aaacgggccggcgcccgcgaggagatggagcggagcagccgctaccacatccccgaggag
agcagggataagaagatcccggagcgcgaggaggcgcccgaggaggcgctggcgccgcgg
gacgagcagcggcgctgggaggagcagctgctgggggcggccgcgctgcgcttcggggcc
agggacgcgcggcaccggcaccggcacggccgcgactacgagctgctgctggaggaggac
gagatggtgcagttcgtcagtgctgcgcaattagaggggactgacccccaaaaggacgtc
cccgaggccgtccccgaggccgagcgccgccggcagtctctgcaggacgcgcgccgggcc
ctgcccatcttccccttccgggacgagctggtggcggccgtggcgcagcaccaggtgctg
gtgatcgagggcgagacgggctcggggaaaaccacccagatcccccagtacctgcacgag
gagggctacacgcggggggggctgaagatcggggtgacgcagccgcgccgcgtggcagcc
atgagcgtggcagcgagggtggccgtggagatggggaccaagctgggcaacgaggtcggg
tacagcatccgcttcgaggactgcacgtcggagcgcacggtgctcaagtacatgacggac
gggatgctgctgagggagttcctgacagagcccgacctggcctcctacagcgtgatcatg
gtggacgaggcccacgagcgcaccctgcacacggacgtgctcttcggcctcatcaaggac
atcgcccgcttccggccgcagctcaaggtcctggtggcctcggccacgctggacaccgag
cgcttctcggccttcttcgaccacgcgcccgtcttccgcatcccggggcgccgcttcccc
gtggacatctactacaccaaggcacccgaggccgattacctggaggcgtgcgtggtgtcg
gtgctgcagatccacgtcacccaaccccccggggacatcctggtcttcctcaccgggcag
gaggagatcgaggcctgcgtggagctgctgcaggagcgctgccgccgcctgggctcgcgc
ctgcccgagctgctggtgctgcccatctacgccaacctgccctcggagctgcaggcccgc
atcttccagcccacgccccccggcgccaggaaggtggtggtggccaccaacatcgccgag
acctcggtgaccatcgacggcatcgtgtacgtgctggaccccgggttctgcaagcagaaa
agctacagcgcccgcacgggcatggagtccctggtggtgacaccgtgctccaaggcctca
gccaatcagcgcgcaggccgcgccggccgcgtggcgcccgggaagtgtttccgcctctac
acggcctgggcgttccagcacgagctggaggagacggcggtgcccgagatccagagagcc
gacctgggggcgctggtgctgctgctcaagagcctgggtatcaacgatctgatccacttt
gatttcctggaccctcccccccacgagacgctggtgctggcgctggagcagctctacgcg
ctgggggcgctgaaccacctgggcgagctcaccacgctgggccggcgcatggcggagctg
ccggtggagccaatgttggccaagatgatcctggcgagcgagcagtacggctgcactgag
gaggttctcacggtggccgccatgctgtcggtgaacaacgccgtgttctaccggcccaag
gacaaggtgctgcacgccgacagcgcccgcgtggccttcaccgtgcccgggggcgaccac
ctggtgctgctcaacgtctacaaccagtgggtggccagcggtcactccctgcaatggtgc
tacgagcactttgtgcaggcgcgctccctgcgccgggcccgcgacgtgcgggagcagctg
caggggctgatggagcgcgtggagatcgcgccctcctcgtgcgggggcaacctggacctg
gtcaggaaggccatcacagccgggttcttttaccacacggcgcgcctggcgcggggcggg
taccgcacggtgaagcaccagcagcccgtgttcatccaccccaacagcgccctgttctcg
ctgcagccccgctgggtgctctaccacgagctggtgtgcacctccaaggagttcatgaga
caggtgatcgagatcgacagctcgtggctgctggaggtcgccccccattattaccaggcc
aaggagctcgaggacggcagcggccgcaaaatgcccaaaaaagccggaaaatcgcgggag
gagctgggctga
DBGET
integrated database retrieval system
