Zonotrichia leucophrys gambelii (white-crowned sparrow): 135461092
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Entry
135461092 CDS
T09958
Symbol
SUPT5H
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
135461092 (SUPT5H)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zle03021
]
135461092 (SUPT5H)
03019 Messenger RNA biogenesis [BR:
zle03019
]
135461092 (SUPT5H)
Transcription machinery [BR:
zle03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
135461092 (SUPT5H)
RNA polymerase I system
135461092 (SUPT5H)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
135461092 (SUPT5H)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
KOW6_SPT5
Spt5-NGN
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
135461092
NCBI-ProteinID:
XP_064594148
LinkDB
All DBs
Position
Unknown
AA seq
1082 aa
AA seq
DB search
MSDSEESNFSEEESERSSDEGDDNEPEEQRGGGGSGKEEPEEEEEEEEEEEEEEEEYDEE
EEEEEDDDRPAKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKASNIDNVVLDEDRS
GARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLW
TVKCKIGEERATAIALMRKFIAYQYTETPLQIKSVVAPEHVRGYLYVEAYKQTHVKQAIE
GVGNLRLGYWNQQMVPIKEMTDVLKVVKEVTNLKPKAWVRLKRGIYKDDIAQVDYVEPSQ
NQISLKMIPRIDFDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLI
FEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNF
QPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFRMGDHVKV
IAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELV
QLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIV
KVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFAMC
GFTPMSPRISSPMHPSGAGQRGAFGSGGLSRGRGRRDNDLIGQTVRISQGPYKGYIGVVK
DATESTARVELHSTCQTISVDRQRLTTGRGRPPGGLTSAYGRTPMYGSQTPMYGSGSRTP
MYGSQTPLHDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRADEDFEYGFEDEPT
PSPQGYGGTPNPQTPGYPDPASPQVSQPYNPQTPGTPAMYNTEQFSPYAVPSPPGPPLPS
PEPGLHPTCPAHLGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPH
TPGSGIEAGAGGDWVTTDIQVKVRDSYLDSAAVGQTGVIRSVTGGMCSVYLKDSEKVVSV
SSEHLEPVTPTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLEEQLKILNLRFLGKLL
EA
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagcgaggagagcaacttctcggaggaggagagcgagcgcagcagcgacgag
ggcgacgacaacgagcccgaggagcagcgcggcggcggcggcagcggcaaggaggagccc
gaggaggaggaggaggaggaggaagaggaggaggaggaggaggaggagtacgatgaggag
gaggaggaggaggaagacgacgaccggccggccaagaagccgcggcacgggggcttcatc
ctggacgaggctgacgttgacgatgagtacgaggatgaagatcagtgggaggacggggct
gaggacatcctggagaaagcgtccaacatcgacaacgtggtgctggacgaggatcgctcg
ggggcgcggcgcctgcagaacctctggagggaccagcgggaggaggagctgggcgagtac
tacatgaagaaatacgccaagtcctccgtgggcgagacagtttacggcggctccgacgag
ctctcggatgacatcacccagcagcagctgctgcccggcgtcaaggaccccaatctctgg
acagtcaagtgcaagatcggggaggagcgcgccacggccatcgccctcatgcggaaattc
atcgcctaccagtacacggagacgcccctgcagatcaaatccgtggtggcacctgagcac
gtgcgcgggtacctgtacgtcgaggcctacaagcagacgcacgtcaagcaggccatcgag
ggcgtgggcaacctgcgcctgggctactggaaccagcagatggtgcccatcaaggagatg
accgacgtgctcaaggtggtcaaggaggtgaccaacctgaaacccaaggcctgggtgcgc
ctcaagaggggcatctacaaggacgacatcgcccaggtggattacgtggagcccagccag
aaccagatctcgctcaagatgatccccaggatcgacttcgaccgcatcaaggcccggatg
agcctgaaggattggttcgccaagcgcaagaagttcaagcggccgccccagcgcctcttc
gacgccgagaaaatccgctccctgggcggggacgtggcctccgacggcgacttcctgatc
ttcgagggcaaccgctacagccgcaagggcttcctgttcaagagcttcgccatgtccgcc
gtgatcacggagggcgtcaagcccaccctgtccgagctggagaaattcgaggaccaaccc
gagggcatcgacctggaggtggtgaccgagagcacaggcaaggagcgcgagcacaacttc
cagcccggcgacaacgtggaggtgtgcgagggcgagctcatcaacctgcagggcaagatc
ctcagcgtggacggcaacaagatcaccatcatgcccaagcacgaggacctcaaggacatg
ctggagttcccggcgcaggagctgcgcaagtacttccggatgggcgaccacgtcaaggtg
atcgcgggcaggttcgagggggacaccgggctcatcgtcagggtggaggagaacttcgtc
atcctgttctcggacctgaccatgcacgagctgaaggtgctgccccgggacctgcagctc
tgctccgagacggcctcgggcgtggacgttggggggcagcacgagtggggggagctggtg
cagctggacccccagaccgtgggcgtcatcgtgcgcctggagcgcgagaccttccaggtg
ctgaacatgtacggcaaggtggtgacggtgcgccaccaggcggtgacgcgcaagaaggac
aatcgcttcgccgtggcgctggactcggagcagaacaacatccacgtcaaggacatcgtc
aaagtcatcgacggcccccactccggccgcgagggcgagatccggcacctgttccgcggc
ttcgccttcctgcactgcaagaagctggtggagaacgggggcatgttcgtgtgcaagacg
cgccacctggtgctggcggggggctccaagcctcgcgacgtcaccaacttcgccatgtgc
ggcttcacgcccatgtccccccgcatcagcagccccatgcaccccagcggggccgggcag
aggggcgcatttgggtctgggggcctcagccggggccgcggccggcgcgacaacgacctg
atcgggcagacggtgcgcatctcgcaggggccctacaaagggtacatcggcgtggtgaag
gacgccacggagtcgacggcgcgcgtggagctgcactcgacgtgccagaccatcagcgtg
gacaggcagcgactgaccactggtcgcggacgaccacccgggggtctcacctcggcctac
gggaggacccccatgtacggatcgcagacccccatgtacggctcggggtcccggaccccc
atgtacggctcacagacccccctgcatgacgggagccgcaccccccactatggctcgcag
acccccctgcacgacgggagccggaccccggcccagagcggggcctgggaccccaacaac
cccaacacgccctccagggctgacgaggatttcgagtacggcttcgaggacgagcccacc
ccgtccccccagggctacggggggacccccaacccgcagacccccgggtaccccgacccc
gcgtccccccaagtcagccagccctacaacccgcagacccccgggacccccgccatgtac
aacacggagcagttctccccctacgccgtcccctcccccccaggccctccactaccaagt
cccgagcccgggctccaccccacctgcccagcccacctgggctaccagaacacgcactca
cctgcgagttatcaccccacgccctcgcccatggcttaccaggccagccccagccccagc
ccggtgggctacagccccatgacccccggcgccccctccccgggcgggtacaacccccac
acccccggctcgggcatcgaggcgggcgcgggcggcgattgggtgaccacggacatccag
gtgaaggtcagggactcgtacctggacagcgcggccgtgggccagaccggggtcatccga
tccgtcacgggcgggatgtgctccgtgtacctcaaggacagcgagaaggtggtcagcgtg
tccagcgagcacctggagcccgtcacgcccaccaagagcaacaaggtgaaggtgatcctg
ggcgaggaccgcgaggccaccgggatcctgctcagcatcgacggcgaggacggcatcgtg
cgcatggacctggaggagcagctcaagatcctcaacctgcgcttcctgggcaagctgctc
gaggcctga
DBGET
integrated database retrieval system
