Zea mays (maize): 100193137
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Entry
100193137 CDS
T01088
Name
(RefSeq) exosome complex exonuclease RRP43
KO
K12586
exosome complex component RRP43
Organism
zma
Zea mays (maize)
Pathway
zma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100193137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
100193137
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
100193137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
100193137
NCBI-ProteinID:
NP_001131768
UniProt:
B4FDY3
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Position
1:199100088..199109102
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AA seq
306 aa
AA seq
DB search
MAAETKPAAASGVAGEMEVEAYRRLFPVAFLERHLGESVRIDARRLREARPTTVALGAVS
SAHGSALARLGDTAMLASVKLEVMSPPAEHPDEGSVAVEFHMPPICSPLVRPGRPTDVAP
VISKALEDVLTSSGMLNLKDLCLITGKASWLAYLDIYCLNADGSLFDAALISAVAAFTHL
EIPLVSVGDDGRLFTVGGNDGKNKFELVNREKRKLTLGAIPLSLTCALHKDEILADPTSE
EESIIETYVTVVVDSSDRLVSLQKLGGAVTCMATIKECISLAKERRRSLREILLDSIKAM
EVDQTE
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggagactaaaccggctgcggccagcggggttgccggcgagatggaggtggag
gcgtaccgccgccttttcccggtggccttccttgagcgccacctcggcgagtccgtccgc
atcgatgcccgccgcctcagagaggcccgccccaccaccgtcgccctcggcgccgtctcc
tccgcgcatggttccgctctcgcccgccttggcgacaccgccatgctcgcgtcggtcaag
ctcgaggtgatgtcgcccccggcggagcacccagacgaaggatccgtcgctgttgagttc
cacatgccgcctatctgctccccgctggttaggccaggccgacccactgacgttgcaccc
gtcatctccaaggcccttgaagacgttttgacgagttctggaatgctaaatttgaaggac
ctctgtttgatcactgggaaggcttcttggctagcgtacctggatatctattgcttgaat
gctgatgggtctctgtttgatgctgcacttatttcagcagtggctgccttcacacatttg
gagattcctttagtttctgttggtgatgatggtagattatttactgttggaggcaatgat
ggaaaaaacaaatttgaattagtaaacagagaaaagaggaaactgacacttggtgccatt
ccattgtcccttacatgtgcacttcataaagatgaaatattagcggacccaacttctgaa
gaagaatcgataatagagacctatgtgactgttgttgtagattcttcagaccgcctagtg
tcattacaaaaacttggaggtgcagtgacatgcatggcgactattaaggagtgcattagc
ttggcgaaagaaaggagacggagcctaagagaaattctgttagactctatcaaagccatg
gaagtcgaccaaactgaataa
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