Zea mays (maize): 100193927
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Entry
100193927 CDS
T01088
Name
(RefSeq) uncharacterized protein LOC100193927
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
zma
Zea mays (maize)
Pathway
zma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100193927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
100193927
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100193927
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100193927
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Peptidase_M9_N
DUF5646
DUF5965
DUF4407
Motif
Other DBs
NCBI-GeneID:
100193927
NCBI-ProteinID:
NP_001346280
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Position
5:16421715..16449827
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AA seq
855 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKALMDARKQIEREMERFKVCEKETKTKAFSKEGLGQQPKTDPKEKA
KAETRDWLNNVVSDLESQIDNFEAEIEGLSIKKGKQRPPRLVHLETSITRHKAHIKKLES
ILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVEDLYSTLPMEKVEALEDMVSL
APSSLVKGVAPVSTTAVLSTKSSVATSPTQPTVSTASSQSTSQDQTEETASQESNPEPTP
QTPPPKGGNPGPSVPAVPIVVSTGSAAVSVPAETISSPVRLTVPATAATVLSSAIPRSAP
ENTLAVTSIPANLSTTLKDDESMSVPPRRPSPATEIGIGRGITRGTTSQALGTAPITIGP
VSGNGSVSALPAINDLSKINILNTDEKINSDGLSQQLVMPLGSKVQPQQVPRTNDAIGSD
SANTNENPILGGRVFSPPVVSGVQWRPQAAAAFQNQIETNQYRGRPEISADHREKYIQRL
QQVQQQGGSLLNVSHITGINQKQFPTPQPNPLLQQFNSQSSSISSQVNLGLGVQGSDAGH
IKSEDQQILAEDVGVESSATTGANKQTSEDDTKIPYSNPSAPAAENTQLPRDTDLSPGQP
LQPGMPSSGVGVIGRRSVSDLGTIGDNLTGTSGSSGHDQNYYLQMLEAAFHKLPQPKDSE
RAKTYIPRHPAVTPASYPQVQASIVSNPTFWERIGSDTLATDMLFFAFYYQQNTYQQYLA
ARELKKQSWRFHRRYNTWFQRHVEPQVTTDEYERGSYVYFDFHVTEDGSGWCQRIKNDFT
FEYNYLEDELSVQTN
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccagccggaagctgcagggcgagatcgaccgcgtcctgaagaaggtccaggag
ggcgtcgatgtctttgacagcatctggaataaggtctacgacactgagaatgccaaccag
aaggagaagttcgaggcggacctcaagaaggagatcaagaagctgcagcggtacagggac
cagatcaagacgtggattcagtccagcgagatcaaggacaagaaggctctgatggatgct
cgaaagcagattgaacgagagatggaacgatttaaagtatgtgagaaggaaacaaaaact
aaggccttctcaaaagaagggttaggtcagcaaccaaaaacagatcccaaagaaaaggcc
aaagctgaaacaagagactggcttaataatgtggttagcgatttggaaagccagattgat
aacttcgaagcagagattgaagggctttcaattaaaaagggaaagcaaagaccgcctcga
ttggtacatttagagacgtctattacgagacataaagctcatataaagaaattggagtca
atcttgcggcttttggataatgatgagttgagtcctgagcaagtcaatgatgttaaagat
tttcttgatgactatgttgaacgtaatcaggaagactttgatgaattcagtgatgttgag
gacctctatagcacattgcccatggagaaggttgaagcacttgaagacatggtttcactt
gctccttctagtcttgtgaagggtgttgctcctgtttcgactactgcagttttgagcaca
aagagttctgttgcaacttcacctactcagcctacagtatcaacagcttcttcacaaagt
acatcacaggatcaaacagaggagacagcttcccaagaaagcaatcctgaacctacgcca
caaacaccacctccaaaaggtggaaaccctggaccttcagtaccagctgtgcccattgtt
gtcagtactggtagtgcggctgtttctgtacctgcagaaacaattagttcccctgtgcga
ctaactgtacccgccacagcagccacagtgctttcttctgctattccacgaagtgctcct
gagaatacacttgctgttacctcaattcctgcaaacttatctaccactttgaaggatgat
gaaagcatgagtgttcctccacgacgaccatctcctgctactgaaattggaattggcagg
ggcataactcgaggaacaactagtcaggcattaggtacagctcccataactattggtcca
gtttcaggaaatggatcggttagtgcacttcctgcaataaatgacttgtccaaaataaat
atattgaacactgacgagaagattaacagtgatggtctttctcagcagttggttatgcct
cttggtagtaaagttcaaccccagcaggttcccaggactaatgatgcaatcggctctgat
tctgctaacacaaatgaaaaccctattcttggtggaagagtattttctcctccagttgtt
tctggggttcaatggagacctcaagctgctgctgcatttcaaaatcaaattgaaactaat
cagtaccgtggaaggcctgagatttctgctgatcacagggagaagtacatacagagactg
cagcaagtacagcagcaaggtggcagccttctgaatgtttcccatataactggcataaat
cagaagcaatttccaacaccacagccaaatccccttctacaacagtttaattcacagagt
tcctctatatcttcccaagtgaatcttgggcttggagttcaaggatcagacgcggggcat
ataaaaagtgaagatcaacaaattttggctgaagatgttggtgtggaatcttccgcaaca
acaggagcaaataaacaaacaagtgaagatgacacaaagattccatattcgaatccttca
gcacctgcagcagaaaacactcagctgcctagggatactgatctatcacctggacagcct
ttgcaacctggaatgccatcatctggtgttggtgttatcggccgaagaagtgtatctgat
cttggtacaatcggagataaccttactggaacttctggtagttctggtcatgatcagaat
tattatctgcaaatgcttgaagctgcattccacaagcttccacagcccaaggactctgag
cgtgctaaaacttacattccgcggcaccctgcagttacccctgctagctacccccaagtt
caggcatcaattgtatcgaatcccaccttttgggaaagaattggtagcgacacattagct
accgacatgctgttctttgcgttctactaccaacagaacacatatcaacaatacttggct
gctagagaactgaagaagcaatcatggagatttcaccggaggtacaatacctggttccag
cggcatgtggagccacaggtcacgactgatgagtatgagcggggatcatatgtatacttt
gatttccatgtcactgaggatggctcaggatggtgccaaagaatcaagaatgacttcaca
tttgagtacaactacctggaggatgagctatcagtacaaacaaactaa
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