Zea mays (maize): 100217127
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Entry
100217127 CDS
T01088
Name
(RefSeq) uncharacterized protein LOC100217127
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
zma
Zea mays (maize)
Pathway
zma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100217127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
100217127
03041 Spliceosome [BR:
zma03041
]
100217127
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100217127
Spliceosome [BR:
zma03041
]
Complex B
Other components
Prp19-related factors
100217127
Complex C
100217127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
Mad3_BUB1_I
TPR_2
TPR_12
PPR
TPR_15
ARM_TT21
ARM_TT21_C
DUF4611
Motif
Other DBs
NCBI-GeneID:
100217127
NCBI-ProteinID:
NP_001337639
LinkDB
All DBs
Position
7:complement(179119288..179124743)
Genome browser
AA seq
928 aa
AA seq
DB search
MPSASGPVAVASAPAPVKSAPSLAVGISPDLYPTEDDLPYEEEILREPFKLKGWWRYLVA
RATAPFAKRAVIYERALKALPGSYKLWHAYLRDRLDHARPHPIDHPAYSSLNNTFERALA
TMHKMPRVWVLYLTSLLDQRLLTRARRAFDRALRALPVTQHDRIWPLYLRLASLPACPVE
TSLRVFRRYLQFDPSHAEDFINFLISANHWQEAANRLASVLNDDGFRSVKGKTRHQLWLE
LCEILTKHADEVAGLKVDAILRGGIRKFTDEVGKLWTSLADYYVRRGLFEKARDVFEEGV
SSVVTVKEFSVVFEAYTQFEQSMLAAKLEAAEEEGAEDENEGGGRKSGMDKLSKKFLNEF
WLNDEDDTDLRMARFERLLDRRPELLSSVLLRQNPHNVEEWHRRVKLFEKDPARQVATYV
EAVKTVDPMKAVGKPHTLWVAFAKMYEKHSRLDSAEDIFKRATQVNYKAVDHLASIWCEW
AEMELRHNNFDKAIELMRQATSEPSVEVKRRAAAEGDEPVQMKVHKSLKLWSFYVDLEES
LGTLDSTRAVYERILDLRIATPQIILNYAYLLEEHKYFEDAFKVYERGVKIFKYPHVKAI
WVTYLTKFVHRYKRSKLERARELFHEAVQQAPAEEKKPLYLQWAKLEEDYGLAKRAMNVY
DEAVRAVPNSEKMAMYEIYIARAAELFGVPRTRQIYEQAIESGLPDRDVLTMCMKFAELE
RSLGEIDRSRAIYVHASNYADPNNPDFWKKWNDFEIQHGNEDTFREMLRIKRTVAASRSQ
THFILPEYLMQRDQKLNLDEAVDTLKRAGVPEDEMAALERQLATGPSTAPPAAPSTAPAS
ANRMMNFVSAGVEAQVESSRQQAANNEDIELPDESDDEEPDVQIAEKSVPAAVFGELGKR
AAENNEESSGAQGNEQLGALERIKRRRQ
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcagcgtcgggtccggtggccgtggcgtcggcgccggcgccggtgaagtccgca
ccgtccctggccgtcgggatctcgccggacttgtacccaacggaggacgacctgccgtac
gaggaggagatcctgcgggagcccttcaagctcaaggggtggtggcgctacctcgtggcc
cgcgcgaccgcgccgtttgccaagcgcgccgtcatctacgagcgcgcgctcaaggcgctc
ccgggaagctacaagctctggcacgcctacctccgcgaccgcctcgaccacgcgcgcccg
caccccatcgaccacccggcctactcctccctcaacaacacattcgagcgggcgctggcc
accatgcacaagatgccgcgcgtctgggtcctctacctcacctcgctgctcgaccagcgc
ctgctcacgcgcgcgcgccgcgccttcgaccgcgcgctccgggcgctccccgtcacgcag
catgaccgcatctggccgctgtaccttcgcctcgcttcgcttccggcctgccccgtcgag
acgtcgctccgagtcttccgccgatacctccaatttgacccctcccacgctgaggacttc
atcaatttcctcatatcagccaaccactggcaggaggccgccaaccgtctagcttctgtg
ctcaacgacgacgggttccgctcagttaaggggaaaacgaggcaccagctctggcttgag
ctctgtgagatcctcaccaagcacgctgatgaggttgctggcctcaaggtggacgccatc
ttgcgtggtgggatacgcaagttcactgatgaggtcggcaagctgtggacctcactggct
gattactatgtcaggagaggcctttttgaaaaagctagggatgtgtttgaggagggtgtt
tcttcagtggttaccgtcaaggagttcagtgtggtgtttgaggcatatacacagtttgag
cagagtatgcttgcggcaaagcttgaggctgctgaggaagaaggggctgaggatgagaac
gagggagggggcaggaagagtgggatggataagttatcgaagaaattcctcaatgaattc
tggttgaacgatgaggatgatactgatttgaggatggcaaggtttgagcggctgttggat
cgcagaccagagcttcttagcagtgtgctgctgcgacagaatccacacaatgtggaggaa
tggcacaggagggtgaaactctttgaaaaggatcctgcaaggcaagtagcgacatatgtt
gaggccgtgaaaactgtagacccaatgaaggcagttgggaaaccacatactctgtgggtg
gcatttgcaaagatgtatgagaaacacagtcgtctagatagtgctgaagatatcttcaaa
cgggctactcaagttaattataaggcagttgaccatttagctagtatctggtgtgagtgg
gcagagatggagttgcgccacaacaattttgacaaggctattgaactgatgaggcaagca
acatcagaaccctctgttgaggttaagaggcgggctgctgctgagggggatgagcctgtc
caaatgaaagtgcacaaatctttgaaactgtggagcttttatgttgatctggaggagagc
ctcggaaccttagactctacccgtgcggtttatgagagaatattggatttacgaattgcc
actccacagataattctcaattatgcatatctcctcgaggagcacaagtatttcgaagat
gcatttaaagtgtatgaaaggggcgtgaaaatattcaagtatccccacgttaaggccatc
tgggtgacctaccttacaaagtttgtacatagatacaagcgaagcaagttagagcgagca
agagagcttttccatgaagctgtccaacaggctcctgcagaggaaaagaagcccctatat
ttacaatgggcaaaactggaggaagactatggtcttgcaaaacgtgctatgaatgtatat
gatgaggctgtaagagctgttcctaactctgaaaaaatggccatgtacgaaatctatata
gcacgcgctgccgaactctttggtgttccaaggacaagacaaatatatgagcaagcaatt
gaatctggcctcccagacagagatgtgctgacaatgtgcatgaaattcgctgagctagag
agaagtcttggggaaatcgatcgttcgcgtgccatctatgtgcatgcatccaactatgct
gatccaaacaatcctgacttttggaagaagtggaatgattttgagattcagcacggtaac
gaagatacattcagggagatgcttcgtatcaaacgcacagtggctgctagccgcagtcag
acacatttcatactgccagagtacttgatgcagagggatcagaagttaaacctggacgaa
gcagttgacactctgaagcgtgctggcgtccctgaggacgagatggcagctttggaaagg
caactggctaccggaccatctactgccccaccagcagcaccaagcactgccccagcctct
gctaacaggatgatgaactttgtcagtgctggagtagaggcccaggtcgagagcagcagg
caacaggctgctaacaatgaggacattgagctgcccgatgagagtgacgatgaggaaccc
gatgtccaaattgcggagaagagcgttcctgctgcggtatttggtgagctcggcaagaga
gctgccgagaacaatgaggaaagctcaggtgcccaagggaatgagcagctgggcgccctc
gagaggataaagagacgacgccaatag
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