Zea mays (maize): 100273717
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Entry
100273717 CDS
T01088
Name
(RefSeq) uncharacterized protein LOC100273717
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
zma
Zea mays (maize)
Pathway
zma03013
Nucleocytoplasmic transport
zma03015
mRNA surveillance pathway
zma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100273717
09122 Translation
03013 Nucleocytoplasmic transport
100273717
03015 mRNA surveillance pathway
100273717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
100273717
03041 Spliceosome [BR:
zma03041
]
100273717
Enzymes [BR:
zma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100273717
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100273717
Spliceosome [BR:
zma03041
]
Complex C
Other components
EJC/TREX
100273717
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100273717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
100273717
NCBI-ProteinID:
NP_001141599
UniProt:
K7UTZ2
C0PJ26
B6TE13
LinkDB
All DBs
Position
8:80215655..80220363
Genome browser
AA seq
429 aa
AA seq
DB search
MMGEAKENDVYEEELLDYEEDDDKTVDGSAAKPTGEVAKKGYVGIHSSGFRDFLLKPELL
RAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVAAL
VLCHTRELAYQICHEFERFSKYLTEVKVAVFYGGVHIRKHKDLLKNECPHIVVGTPGRIL
ALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRP
VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSV
SRAAELNKLLCECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVN
IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQ
IDTSTYMPS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgatgggagaggccaaggagaacgacgtttatgaggaggagctcctggactacgaggag
gacgacgacaagacggtcgatggctccgctgctaagcccaccggagaggtcgcaaagaag
ggctacgtcgggatccacagttccggtttcagagacttcctgctcaagccagagctgctc
cgtgctatccaggattgtggttttgagcatccttccgaagtgcaacacgagtgtatccct
caagccattcttggaatggatgtcatctgtcaagctaaatctgggatggggaaaactgct
gtttttgtcctttcatccctccaacaaattgaccctgttgcgggtcaggtagcagcactt
gtactgtgccacacaagggaactggcttatcagatatgccacgaatttgagaggttcagc
aaatatcttactgaagttaaagttgctgtcttctatggaggtgttcacatcaggaagcat
aaagatttgttgaagaatgaatgccctcatattgtggttggcacgcctggtaggatactt
gctcttgccagggataaggatctctccttgaagaatgtgaggcacttcattcttgatgaa
tgtgacaaaatgctggaatcacttgacatgcggagagatgttcaggagatcttcaaaatg
actcctcatgataagcaagtcatgatgttttcagcaacgctcagcaaggagatccgtcct
gtatgcaagaaatttatgcaagatccgatggaaatatatgttgatgatgaggcaaagttg
accctccatggtcttgtacagcactatataaaacttagcgaggcagagaagaaccggaaa
ctgaatgatctcttggacgctcttgatttcaaccaagttgtgatattcgtgaagagtgtt
agcagagctgccgaactgaataagttactttgtgaatgcaacttcccatcaatctgcatt
cattctggaatgactcaggaagaaaggctaacaagatataagaacttcaaggaaggccac
aagagaattcttgtggctacagatttagttggcaggggcattgacattgagcgtgtcaac
attgtgataaactatgacatgccagactcagctgatacttatttgcacagggttggaagg
gctggacgttttggcacgaagggacttgcaattacctttgtttcctctgcttcggattct
gatgttcttaaccaggtgcaagaaaggtttgaggtagacataaaggaactgcctgagcaa
attgacacctcgacctacatgccatcataa
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