KEGG   Zea mays (maize): 100273845
Entry
100273845         CDS       T01088                                 
Name
(RefSeq) protein SOF1
  KO
K11806  DDB1- and CUL4-associated factor 13
Organism
zma  Zea mays (maize)
Brite
KEGG Orthology (KO) [BR:zma00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:zma03009]
    100273845
   04121 Ubiquitin system [BR:zma04121]
    100273845
Ribosome biogenesis [BR:zma03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    100273845
Ubiquitin system [BR:zma04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     100273845
SSDB
Motif
Pfam: WD40 Sof1 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WDR55 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd EIF3I Beta-prop_EML Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C NBCH_WD40 WD40_MABP1-WDR62_2nd WD40_RFWD3 Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_IFT122_1st eIF2A Beta-prop_IFT140_1st Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_IP5PC_F Beta-prop_NUP159_NUP214 PROPPIN VID27
Other DBs
NCBI-GeneID: 100273845
NCBI-ProteinID: NP_001141716
UniProt: B4FXR9
LinkDB
Position
1:306110086..306118517
AA seq 452 aa
MRVKVISRSTDDYTRERSQDLQKVFRNYDPALRSQEKAVEYTRALNAAKLEKIFAKPFIG
AMDGHIDAVSCMAKNPNHLKAIFSGSMDGDVRLWDIAARKTVCQFPGHQGAVRGLTTSTD
GDLLVSCGVDCTVRLWKVPMLKMVDTSERAGDNSQPSAVYTWKHAFWGADHQWDGNLFAT
VGAQVDIWDPDRSEPINSFEWGKDTVLSVRFDPGDSNILITSGSDRSLTLYDLRMSSPAR
KLIMKTRCNSVCWNPREPMNFTAANEDTNCYSFDARKLDEAKIVHKGHVSAVMDIDYSPT
GREFVTGSYDRTVRIFNYLGDHSREIYHTKRMQRVFCVKYTYDGTYLVSGSDDTNLRLWK
SKASEQLGVLLPRERKKQEYQDALKERYKHLPEVKRIVRHRHLPKPIYKAANLRRTMIEA
ESRKEERRRKHSAPGSMPVQPFRKRRIIREVE
NT seq 1359 nt   +upstreamnt  +downstreamnt
atgagggtgaaggtgatttcgcgttccaccgacgactacacgcgcgagcgcagccaggac
ctgcagaaagtattccgcaactatgatccagcgcttcgtagtcaagagaaagctgttgag
tatactcgggcactcaatgctgccaagttagagaagatatttgctaagccatttatcgga
gctatggatgggcatattgacgcggtatcgtgcatggccaaaaaccccaatcatttgaaa
gcaatattttctggttcaatggatggagatgttcgcctttgggatattgctgcgaggaag
acagtttgtcagttccccgggcaccagggtgctgtaagaggtttaacaacatccacagat
ggtgatcttcttgtatcatgtggcgttgactgcactgttcgactctggaaagttccgatg
cttaaaatggtggatactagtgagcgtgctggagataattcccagccatcagcagtttac
acctggaagcatgcattctggggtgctgatcaccagtgggacggcaatcttttcgcaact
gttggtgctcaagttgatatatgggatcctgacaggtcagagccaataaatagcttcgaa
tggggtaaagatacggttctttctgtgcgatttgatcctggagactctaatattttgatt
acgtcgggcagtgatcggagtctgacactctatgacttgcgtatgtcatctccagctaga
aagctgataatgaagacaaggtgcaattcagtatgctggaaccctagagagcctatgaac
ttcactgctgcaaatgaagacacaaactgttactcctttgatgctagaaaattagatgaa
gcaaaaattgttcacaaaggccatgtttcagcagtgatggatattgactactcaccaaca
gggcgtgaatttgtcactggttcatatgatagaacagtaaggatttttaattatcttgga
gaccacagcagagagatttaccacaccaagaggatgcaaagggtgttttgtgtgaagtac
acctatgatgggacctatttagtctctggcagtgatgatacaaatcttcgtctgtggaag
tccaaagcttcagaacaacttggagttcttcttccacgggagcgcaaaaagcaagagtac
caggatgctttgaaggagcggtacaagcatctcccagaagtcaagcggattgtaaggcat
agacatctaccgaagccaatctacaaggcagccaacctacggcgtacgatgatcgaagct
gaaagccgtaaagaggaaaggaggcgaaagcacagtgctcccgggagcatgcctgtgcag
cccttcaggaagcggagaatcatcagagaagttgagtag

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