Zea mays (maize): 100274342
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Entry
100274342 CDS
T01088
Name
(RefSeq) uncharacterized protein LOC100274342
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
zma
Zea mays (maize)
Pathway
zma03022
Basal transcription factors
zma03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100274342
09124 Replication and repair
03420 Nucleotide excision repair
100274342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zma03021
]
100274342
03400 DNA repair and recombination proteins [BR:
zma03400
]
100274342
Transcription machinery [BR:
zma03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100274342
DNA repair and recombination proteins [BR:
zma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100274342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
IBR
IBR_1
Tfb4
Motif
Other DBs
NCBI-GeneID:
100274342
NCBI-ProteinID:
NP_001142175
UniProt:
B4G0C7
LinkDB
All DBs
Position
2:31350742..31355414
Genome browser
AA seq
428 aa
AA seq
DB search
MYGVGGGFNAPSTAASRRRNPGDEEEDEEDEGGEGRVLEAWERAYADERSWESLQEDESG
LLRPVDTKTLVHAQYRRRLLLRSAAAAAARIQKGLIRYLYIVIDLSRAASEMDYRPSRMA
VVAKHAEAFIREFFDQNPLSHVGLVTIKDGIAHRLTEIGGSPESQIKALMGKLECSGDSS
LQNALDLVHGYLDQVPSYGHKEVLILYSALNTFDPGDITETIAKCKKSKIRCSVIGLAAE
IFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYAAANLIKMGFPQRGAEELI
SICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGLTLVSSPHLARSYHHLFPVPPFDE
VTPVPNRIQRGGQICFSCQQSLYNPDGQSNLHVRCPKCNQHFCLDCDIYIHESLHNCPGC
ESQRSIAS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgtacggcgtcggcggcggcttcaacgcgccctccaccgctgcctctcggcgccgcaac
ccaggcgacgaagaggaggacgaggaggatgagggcggtgagggccgcgtcctggaggcg
tgggagcgcgcgtacgcggacgaacggtcgtgggagtcactgcaggaggatgagtcgggc
ctcctccgtcccgtcgacaccaagaccctcgtccacgcgcagtaccgccggcgcctccta
ctccggtctgccgccgccgccgctgcccgcatccaaaaggggctcatccgctacctctac
atcgtcatagacctctcccgggcggcttcagagatggattatcgtcctagtcgaatggct
gttgttgcaaaacatgctgaggctttcataagagaattctttgaccagaatccattgagc
catgttggcctagtgacaattaaagatggtattgcccatcgacttacagaaatcggaggg
agcccagagtcacagattaaggctttgatggggaagcttgagtgttctggtgattcatcc
ctgcagaatgctctagacctcgtacatggttatttagatcaagtaccatcatatggtcac
aaggaagttctgattttatactctgccctgaatacatttgatcctggtgatatcacggag
acaatagcaaagtgtaagaagtcaaaaattagatgctctgttattggtcttgctgcagag
atcttcatttgcaaacatctatgtgaagagactggtggatcttacacagttgcactggat
gagtctcatttcaaagagttgttactggaacatgctcccccacctcctgcaatagcagaa
tatgctgcagctaatttgattaagatgggctttccacagaggggtgctgaggagcttatc
tctatttgctcttgtcacaagaagataaaatctggggctgaaggttacatatgtcctaga
tgcaaagttaatgtctgtgagcttccaacagaatgtcgaacttgtggtcttacgctagtt
agttctccacacttggcaaggtcgtatcatcatctcttcccagtaccaccgtttgatgag
gtcacccctgtcccaaatagaattcaaaggggagggcagatctgtttcagctgccagcag
agcctttataacccagacggccaatctaacctccatgtgcgctgcccaaaatgcaaccaa
cacttctgccttgattgtgatatttacatccatgagagcctgcacaattgccctggttgt
gagagccaacgcagcatcgcttcatag
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