Zea mays (maize): 100279503
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Entry
100279503 CDS
T01088
Name
(RefSeq) uncharacterized protein LOC100279503
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
zma
Zea mays (maize)
Pathway
zma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100279503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
100279503
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100279503
mRNA degradation factors
5'-3' decay
Decapping complex
100279503
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
100279503
NCBI-ProteinID:
NP_001145976
UniProt:
C0PDG9
A0A804PGN3
LinkDB
All DBs
Position
5:133455975..133461443
Genome browser
AA seq
791 aa
AA seq
DB search
MESGDTKFDASQYAFFGNNAVEEVELGGLDDDDDAAFIEHEDEENPLYGRDNMLEEGVGS
FADIDDLAGTFSKLTRIVNGPKQPVVVSHSGSISRQSSNAEWVQESELPYWPTQPVLDTD
HGLDKKNWWSQPPHSVNFIDYRLQRTSSSPQQDAQHNPVEPILEAKPSPLHRTSTYPQQE
PQYSNTEPIPVPKSSFISCPPSGAASHSSPSQPHHVNMPSPPTAFQLHMSSAQNDLLLPQ
FHHGGTPPGPPFGRQNHVLNNGSMHGKGPRFMPGLMPHQLQCPNGLMPPQMQPPHQHGML
PIQQSPPQFSQLHARMIGPHHSPPQSMQMFGPQHPSSQVMSRFDANFAMPDLSDPRARSM
LQHERLGQRYPHQGYELNNIRIDNGWSRFRSKYMCTEEIENIARMQQAATHINDPYIDDY
YHQACLAKKSAGAQLKHHFCPTLIRDPSSRARSKDEPHAYLQVDALGRLPFSSIRRPRPL
LDVEQASAPSDNAEKSVSKPLDQEPMLAARITIEDGLCLLLDVDDIDRLLQFSQQQDGGL
QLRNRRQGLLEQLAESLQLVDLLAPNKNSPVSPYDDLVFLRIVTLSKGQKLLSHYLELLT
SGSELARIACMAVFRHLRSIFGNMPSDISAVETMNRLAKAVSAHIVQMDLSDLSACLAAV
VCSSLQPPLRPLGSPAGDWASVIIKYVLDRATVLLTDHHVASNYSMRNRSLWQASFDAFF
GLLTQYCMSKFDRVVHTAQLQPAAATVITREMPVELLRASLPHTNEAQRKQLLSFAQRTV
PVGTHSSHGSW
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaggcgataccaaatttgatgcatcacagtatgctttctttggcaacaatgcc
gtggaggaggttgaactaggtggattggatgatgatgatgatgctgcatttattgagcac
gaagatgaagaaaaccctctttatgggagggataatatgttggaggagggtgtaggttca
tttgctgacattgatgatcttgctggaactttctcgaagctgaccagaatagtcaatgga
ccaaagcaaccagtagtagttagtcatagtggatcaatttctagacaaagttctaatgca
gagtgggtgcaagagtctgaacttccatattggcctacacagcctgtattggacactgat
cacgggctggataaaaagaattggtggtcccaaccaccccattcagtcaacttcattgac
tatagactgcagaggacatcgtcatccccacagcaagatgctcagcataatcctgttgaa
cctattcttgaagcaaagccatctcctttacatagaacatcaacgtacccacaacaagaa
cctcagtacagtaatactgaaccaattcctgtgcccaagtcatcattcatttcatgtcct
ccatctggtgcagcatctcattcttcacctagtcagccacatcatgtgaacatgccatct
cctcccactgcattccagttgcatatgtcttctgcacaaaatgatctactccttccccag
ttccatcatggaggtacgcctccagggcctccatttggtagacagaatcatgttttaaat
aatggatcgatgcatggaaagggtcccaggtttatgccaggtttgatgcctcatcaattg
caatgtcccaatggactgatgccacctcagatgcagccacctcatcaacatggaatgctg
ccaatacaacagtccccaccacagttctcacaactacatgcacggatgattggtccccat
cattccccaccacaaagcatgcagatgtttggtcctcaacatccttcttcacaagtgatg
agtagatttgatgcaaactttgctatgcctgacttgagtgatccaagagcaagatcaatg
ttgcaacatgaaaggctgggacagcgttatcctcaccaaggttatgagctcaataatatt
aggatagataatggatggtcacggttcagatccaagtacatgtgtactgaagaaatcgag
aacattgcaaggatgcagcaggctgccacacacatcaatgacccgtatattgatgattac
taccatcaagcttgtttagcaaaaaaatcagcaggggctcaactaaagcaccacttttgt
ccaaccttgattagagatccatcttcacgtgcacgcagtaaggatgagccacatgcatat
ctacaggttgatgctcttgggaggcttccattttcttctatccgcaggcctcgtccgctt
cttgatgttgaacaagcctctgcaccaagtgataatgctgaaaaatctgtgtcaaagcct
cttgaccaagagcccatgcttgctgctaggatcacaattgaagacggactttgcctactg
cttgatgttgatgatattgatcgtctgctgcaatttagccagcagcaagatggtggtttg
caactgagaaacagaagacaggggctcctcgagcagcttgcagaatcactgcaattagtt
gatctccttgcaccaaataagaattcacctgtgtctccgtatgatgatttggtgtttctt
cgcatagtcactctatcaaagggccagaagctactttcccattaccttgagcttctgaca
tcaggcagtgagcttgcaaggatagcttgcatggcagtcttccggcatctaagatccata
tttggaaatatgccctctgatatcagtgcagtggagacaatgaatagacttgcaaaagct
gtatccgcacatattgttcagatggatttgagtgatctcagtgcttgccttgctgctgtt
gtgtgttcatcattgcaaccacctcttcgacctctgggatccccagcaggtgattgggct
tctgtcatcataaagtatgtattggacagagcaacagttctactcactgatcaccatgtg
gcttctaactacagcatgcggaatcgatctctatggcaggcatcattcgacgcctttttt
gggctgcttacacagtactgcatgagtaagtttgatcgtgtggttcatactgcccaattg
caacctgctgctgcaaccgttataaccagggaaatgccagtagagcttctgcgtgccagc
ctccctcataccaatgaggctcaacgcaagcaattgctcagttttgctcaacgcactgtg
cctgttggtacccacagttctcatgggtcttggtag
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