Zea mays (maize): 100280057
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Entry
100280057 CDS
T01088
Name
(RefSeq) exosome complex exonuclease RRP46
KO
K12590
exosome complex component RRP46
Organism
zma
Zea mays (maize)
Pathway
zma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100280057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
100280057
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
100280057
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
100280057
NCBI-ProteinID:
NP_001146469
UniProt:
B8A1N7
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All DBs
Position
5:1206430..1209629
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AA seq
240 aa
AA seq
DB search
MMEGGSRADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPE
KASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLMSC
AINASCAALAFAGIPMKHLAVAISCGVMDNGVVILDTSRAEEQQARSFAHLVFPNSRKSV
ESKDTTQRDEESERGLITCITHGAMSEDDYFNCIERGVMASSRISDFMRKTLQKEASRDA
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atgatggagggaggtagccgcgcggatgggcggaatccgaaccagctccggccgttcacc
tgcaccgggaacccgctccaccgcgcccacggctccgcgcggtgggcgcagggcgacacc
gtcgtgctggccgctgtgtacgggcccaagtcgggaacccggaagggcgagaaccccgag
aaggcctccatcgaggtcgtgtggaagcccaagaccggccagatcggaaggcaagagagg
gaatatgagatgacactcaagaggacgttgcagagcatctgcttgctcacagttcatcct
aacaccaccacctctgtcgtgcttcaggttgtgggtgatgatggttctcttatgtcatgt
gcaattaatgcttcttgtgctgctcttgcatttgctggaatccctatgaaacatctcgct
gtcgcgattagctgtggagtgatggacaatggtgtggttatcttagacactagcagagca
gaagagcagcaagctaggtcgtttgctcacctggtgtttccgaactcgcgcaagtcagtc
gaatcgaaggacacgacacagcgagatgaggagtccgagcgaggattgataacttgcatc
acgcatggagcaatgtccgaggatgactatttcaactgcatagagaggggtgtcatggcg
tcctcgaggatctcggatttcatgaggaagacactgcagaaggaggcttccagggatgcc
tga
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