Zea mays (maize): 100280286
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Entry
100280286 CDS
T01088
Name
(RefSeq) uncharacterized protein LOC100280286 isoform 2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
zma
Zea mays (maize)
Pathway
zma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100280286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zma03021
]
100280286
03019 Messenger RNA biogenesis [BR:
zma03019
]
100280286
Transcription machinery [BR:
zma03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100280286
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100280286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
DUF6415
zf-C2H2_2
Motif
Other DBs
NCBI-GeneID:
100280286
NCBI-ProteinID:
NP_001146686
UniProt:
B8A2X9
LinkDB
All DBs
Position
10:59171889..59186554
Genome browser
AA seq
729 aa
AA seq
DB search
MAGAAASPVAAHVVERFRSRLREEAGSGEPGASAVVRLYAEALRELTFNCKPVITELTIV
AGQHAALAAGGIAGAVCARVAEVPPDQILPSLYLLDSIVKNIGGEYVEHFAIRLQSVFVD
AYYRVHPNQYASMRRLFRTWWPVFPSSVLHSIEDDLQFSPSENNRPTTSTNVHQTESLSP
RPSHGIHVNPKYLEAQHKFKRVNVAHQSAAQDTRQMSDVQEDLINGLTSNSSQGRPSVFQ
HVDISTRRYPSNFGVQNGALLEYQNSEHTLNHGRIATMPAPPWQQPIGLPLRIQGPEHPS
VLGRIPQPVDGEMPVKRLDISGTYNGLNVDKPLVKHRSSPAPAPTEWLPLHHAQSQTLPL
IPPDTKHVRSASDSLEISSFVSHGGSSSVFVPRHQYDAVDRKTGTSNLAQPPSPYQNQDL
LPSSQQNQGTILGNQAHPHRPLKLHPHAHPHHQETFRSFAPGMSVSPFQGQGGNATMTPV
SVLPTSFSVPPAVPPYGVLSAPGFPMPPLPPGPPAPVSLQMGSSSSQVGGPQPFVSGLLS
NLMRHGVISLEPPSQSQDSVGVDFNVDLKVRNESVTNALYQDLPRQCKTCGLRFKCQEEH
RAHMDWHVTKNRNSKNRKKSSRKYFVTAVEWLRAAETVGNDGVPAFVLSDPVPDRQEEKE
IAVPADEEQTSCALCQEPFEDFYSDETDEWMYRGAVYMNAPDGNIDGLEWSQLGPIVHAK
CRSGPGNTS
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggctggggcagcggcgtcccccgtggcggcccacgtggtggaacggttccgctcgcgg
ctgcgcgaggaagcgggcagcggggagccgggcgcctccgcggtcgtgcgcttgtacgcg
gaggcgctccgcgagcttaccttcaactgcaagccggtcatcaccgagctcaccatcgtc
gcaggccagcacgccgcgctcgccgccgggggaatcgccggcgccgtctgcgcccgcgtc
gccgaggtgccacctgatcagatattaccatctttgtatctgctagatagtattgtgaag
aacataggtggggaatatgtagagcattttgcaattaggttgcaaagtgtatttgttgat
gcatactacagagttcatccaaaccagtatgcttcaatgaggcgcctctttcgtacctgg
tggccagtgtttccttcttctgtgcttcacagcattgaggatgaccttcaattttcgccc
tcagagaataaccgtcccaccacatcgacaaatgtgcatcaaacagagtcgttatctcct
agaccatctcatggcatacatgtaaatcctaaatacctagaagcacaacataagttcaag
cgggtcaatgtggcgcaccagtcagcagctcaggacactaggcaaatgtctgatgtgcag
gaggatctgataaatggactaacatcgaatagttcacaaggacggccttcagtgtttcag
catgttgacatttccacaaggagatatccaagcaattttggtgttcagaatggagctctt
ttggagtaccagaattctgaacatactctaaatcatgggagaattgctaccatgccagct
ccaccttggcaacagcctattggtcttccattgcgaatacaaggacctgaacatccttca
gtacttggtagaataccacagcctgtcgacggtgaaatgccagtcaagaggttggacatt
agtggcacgtacaatggtttgaatgtagataaacccttggtgaagcataggtcatcacct
gctcctgccccgacagaatggctcccccttcaccatgcccaatcacaaactttaccacta
attccacctgataccaaacatgttagaagtgcatcagatagtttagaaattagttctttt
gttagccatggaggtagttcatcagtatttgttccacggcatcagtatgatgccgtggat
cggaaaacaggtaccagtaacttagctcaaccaccatcaccatatcagaaccaagatttg
ttgccatcaagtcaacaaaatcaaggtacaattttgggaaaccaagctcatcctcatcgt
cccctaaagttacatccccatgctcatcctcaccatcaggagacctttagaagctttgca
cctggcatgtctgtatctccattccaaggacaaggaggtaatgcaaccatgacaccagtt
tctgttctgccaacgtctttttctgtacctcctgctgtgccaccctatggcgtgctgtct
gcacctgggtttcctatgccaccattaccgcctggaccaccagcacctgtctcactgcag
atgggttcatcatcatcacaagttggtggcccccaaccatttgtctctggactgttgagt
aaccttatgcggcacggtgtaatttcactggaaccacctagtcaatcccaggattctgtt
ggagttgacttcaatgtagacctcaaggtacggaatgaatctgtcaccaatgctttgtat
caggatcttccaaggcagtgcaaaacttgtggtcttcgatttaaatgccaagaggagcat
cgtgctcacatggactggcatgttacaaagaacaggaattcaaagaatcgtaagaaatct
tcacgtaaatattttgtcaccgctgttgaatggttaagagcagcagaaacagtaggaaac
gatggagttcctgcttttgtgctctcagacccagtcccagacagacaggaagagaaagaa
attgctgttcctgcggatgaggagcaaacatcctgtgcattatgtcaagagccatttgaa
gatttctacagtgatgagactgacgagtggatgtacagaggtgcagtttatatgaatgca
ccagatggtaatatcgatggtttggaatggtcacagttgggacctattgtccatgctaaa
tgtcgatctgggcccggcaatacttcttag
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