Zea mays (maize): 100280924
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Entry
100280924 CDS
T01088
Name
(RefSeq) ATP-dependent rRNA helicase spb4
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
zma
Zea mays (maize)
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zma03009
]
100280924
Enzymes [BR:
zma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100280924
Ribosome biogenesis [BR:
zma03009
]
Eukaryotic type
Pre-60S particles
Helicases
100280924
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100280924
NCBI-ProteinID:
NP_001147316
UniProt:
A0A1D6MKY5
C0PFB2
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All DBs
Position
3:14327742..14333651
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AA seq
641 aa
AA seq
DB search
MAASTAAAAARKGALTDQRFSELSPALSPEVVEALDRGGFQRCTPVQAAAIPHLLSHKDV
AVDAATGSGKTLAFIVPVVEILRRRSSPPKSHEVLALIISPTRELSSQIFNVAQPFFATL
NGVSSMLLVGGLDIKAELKKVEEEGANILVGTPGKLFDIMHTDALEYKNLEILILDEADR
LLDMGFQKHINFILSMLPKLRRTGLFSATQTKAVADLSKAGLRNPIRVEVKTEAKSTSKD
AGQQELGPSITPLGLRLEYMICEASKKSSQLVDFLVQNSGKKIMVYFATCACVDYWAVVL
PLIKSLKGSPIIAYHGKMKQSLREKALASFSALSSGVLVCTDVAARGLDIPSVDLIVQYD
PPQDPNVFIHRAGRTARYDQEGDAIVFLLPKEDTYVEFLKLRGVPLTERECLANTDDVIP
QIRSAALEDRNVMEKGLRAFVSFVRAYKEHHCSYIFRWKDLEIGKLAMEYGLLQIPSMPE
VKHHSLSLEGFISVDDVDITQIKYKDKAREKQRKKALKRKAEEEAQNPKPERKRPPEKPE
KPKRKKTGKQRQSIQTKEDLDELAHEYRLLKKLKRGDIDEEEYEKLTGFGDSDGEASDGD
GSNLDERKKGNKAQKKTKQRGKCKSGSKKFEGRSKLRSKRR
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggcagcatccacggcggcggcggccgcgcggaagggagcgctgacggatcagaggttc
tcggagctttcccccgcgctatccccggaggtggtggaggcactggaccgcggcggcttc
cagcggtgcacgcccgtgcaggcggcggccatcccgcacctgctgtcgcacaaggacgtc
gccgtcgacgccgccacaggctccgggaagacccttgccttcatcgtccccgtcgttgag
atcctccgccgccgctcctccccgcccaagtcacacgaggtccttgctctgattatctct
cccacgagagaattgtcctcgcaaatattcaatgtggcccagcccttcttcgcgaccctg
aatggcgtgtcgtccatgctcctggtgggtgggctggatatcaaagcagagctcaagaag
gtagaggaagagggcgcaaacatattggtgggcactcccgggaagctgtttgatataatg
cacactgatgctctagagtacaagaatcttgagattttgatcctagatgaggctgatagg
ctcttggatatgggattccagaaacatattaacttcatactttcaatgttgccaaagctg
aggaggactgggcttttctcagctacccagacgaaagctgttgcggacctatccaaagca
gggttgagaaatcctataagggttgaggttaagacagaggcaaagtccacaagcaaagat
gctggacagcaagagcttggtccatccataacaccattagggcttcggttggagtatatg
atatgtgaagcatcaaagaagtcatctcagcttgttgatttccttgtgcagaatagtggg
aagaaaataatggtatattttgcaacatgtgcttgtgtagattattgggctgttgttctt
ccactaattaagtcgcttaaaggttctccaataattgcttaccatgggaagatgaaacag
agccttcgagagaaagctttggcatcattttctgctctttcaagtggcgttctagtctgc
actgatgttgcagcaaggggtcttgacataccaagtgttgatctgattgtgcagtatgat
ccacctcaagatcccaacgttttcatacatagagctggccgtacagcacgctatgatcaa
gaaggggatgctattgtttttctcttaccaaaggaggatacttatgttgagttcttgaag
cttcgaggtgttcctctcacagaaagggaatgcctcgcaaacactgatgatgtcataccg
cagattagaagtgctgcgctcgaagatcgtaatgtcatggagaaaggacttagagcgttt
gtttcgtttgttcgagcatacaaggagcaccactgctcttacatttttaggtggaaagat
ctcgagattggaaaactagctatggagtatggtttactccagatcccatccatgccagaa
gtgaagcatcattctctttcactagagggatttatttctgttgatgatgttgatattaca
caaatcaagtacaaggataaagctcgagaaaaacaacgcaagaaggcgctgaaaaggaaa
gcagaagaggaggctcaaaatccaaagccggagaggaagagacctccagagaagccggag
aagccaaagcggaagaagacgggcaagcagcgtcagtcaatccaaaccaaggaggacctg
gatgagctggcgcacgagtaccggcttctgaagaagctcaaacgtggagacatcgatgaa
gaggagtacgagaagctcactgggttcggagattctgatggcgaagcttccgatggggat
gggagcaacttggacgagaggaagaagggcaacaaggcgcagaagaaaaccaagcagaga
ggaaaatgcaaaagtgggtctaagaagttcgaagggaggagtaaattgaggagcaaaaga
agatag
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