Zea mays (maize): 100281385
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Entry
100281385 CDS
T01088
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
zma
Zea mays (maize)
Pathway
zma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100281385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zma03041
]
100281385
Enzymes [BR:
zma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100281385
Spliceosome [BR:
zma03041
]
Complex C
Other components
Step II factors
100281385
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
ResIII
nSTAND_NTPase5
nSTAND3
ATPase
SLFN-g3_helicase
FtsK_SpoIIIE
ABC_tran
AAA_30
NB-ARC
AAA_29
Motif
Other DBs
NCBI-GeneID:
100281385
NCBI-ProteinID:
NP_001147775
UniProt:
B6SV02
LinkDB
All DBs
Position
8:166589639..166597987
Genome browser
AA seq
692 aa
AA seq
DB search
MPSFSAGASSQKQQFARGRQLIRQQRKSLPIASVEKRLVEEVRNNDTLIIVGETGSGKTT
QLPQFLYDGGLCQDGKVIGITQPRRVAAVTVAKRVAEECNDHIGKKVGYSIRFDDSTSNA
TRIKYMTDGLLLREALLDPLLSKYSVIVVDEAHERTVHTDVLLGLLKKVQHSRANTNKNG
KTLLGHSQNVTIKECQGIRCAPLKLIIMSASLDAKCFSDYFGGAKAVHIQGRQYPVDILY
TYQPESDYMDATLVTIFQIHLEEGPGDILAFLTGQEEIESLERLIHERARLFPPESSKIC
VTPIYSSLPSEQQMNAFKPAPAGTRKVVLATNIAETSVTIPGIKYVIDPGMVKARAYNPV
TGMESLIIIPVSKAQALQRSGRAGREGPGKCFRLFQESEFDKLVDSTVPEIKRCNLSNVV
LQLKALGIDDIIGFDFMEKPSRTAILKSLEQLILLGALTDDYKLSDPVGHQMARLPLDPM
YSKSLIVSSKFKCLEEMLIVVSMLSVESIFFSVREKLEEARAARKRFESSEGDHITLVNV
YRGAAECLEKSRNANAKEKTMEKALNRWCRENFINYRSLRHARDVHRQIQGHVQQMGLSM
SSCGDDMVLFRRCLTSAFFLNAAMRQPDGSYRALATGQSVQIHPSSVLFRTKVDCVIFNE
LVRTTQNYIKNLTRIDPLWLAELAPQYYATEE
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgccatccttctctgccggcgcctcatcgcagaagcagcagttcgcgagagggaggcag
ctgattcgacaacagcgcaagtcgctccccattgcgtcagtggagaaaaggctagttgag
gaggtgaggaataacgacacactgataattgttggtgagactgggagtggcaaaactact
cagcttccacaatttttgtatgatggtgggctttgtcaggatggtaaagtcattggcatc
actcagcctcggagagttgcagctgttacagtagcaaagcgtgtagcggaggaatgcaat
gaccatattggcaaaaaggttggatactccatcagatttgatgattccacatccaatgca
acaaggattaaatacatgactgatggtttgcttctgagggaagcacttttggatccactc
ttatctaagtacagtgttatagttgttgatgaggctcatgaaagaactgttcatactgat
gtcttgttgggtttgttgaaaaaagtgcaacattcccgagctaataccaataaaaatggg
aagaccttgcttgggcattctcaaaatgtaactattaaggaatgccaaggaataagatgt
gctccactaaagctgataattatgtctgctagtttggatgctaagtgtttttctgattat
tttggtggtgctaaagctgtacatattcaaggtcggcaatacccggttgacatactatat
acttatcagcctgagtcggattatatggatgccacactagttactatctttcagatccat
ttggaggaagggcctggagacattctggcatttctaactggccaagaggagattgaatca
ctggagagacttattcatgagcgtgctcgtttatttccaccagaaagtagtaagatatgt
gttacacctatctattcatctctcccgtcagaacagcaaatgaatgcttttaagcctgca
ccagctggaactcgcaaggtagttctagctacaaatattgctgagacttcagtaacaata
cctggcatcaaatatgttatagatcctgggatggtaaaagctcgtgcttacaatcctgtg
actggaatggaatcactaatcattattccagtctctaaagcgcaggctcttcaaaggagt
ggtcgtgctggacgtgagggaccagggaagtgcttccgattgttccaagaaagtgagttt
gataagctggtggattctactgtgcctgagattaagcggtgtaacctctcaaatgttgtt
ctgcaactcaaggctcttggaattgatgacatcataggttttgattttatggagaaacca
tcaaggactgctattttgaaatcactggagcagttaatcttactaggggctctgactgat
gattataagctctcagatccagttggtcatcagatggctaggctacctttggatccaatg
tactctaagtcattaatagtatcaagcaaattcaagtgcttggaagaaatgctcattgtt
gtatctatgctttcggtggaatcaattttcttctccgtgcgtgagaagttagaagaggca
agagctgccaggaagagattcgaaagctccgaaggagaccatatcacattggtgaatgtc
tatcgaggagctgcagaatgcttggagaagagcagaaatgcaaatgccaaagaaaaaaca
atggaaaaggctctgaacaggtggtgcagagaaaacttcatcaactaccgctctctaaga
catgctcgcgatgttcacagacaaattcagggccatgtccaacaaatggggctgagcatg
tcgtcatgtggagatgacatggttctgtttcggagatgccttacgtctgccttcttcttg
aatgcagcgatgcgacagccagatggttcatacagggcccttgcaactggccagagcgtg
cagatccacccttcatctgtgcttttcaggaccaaggtcgactgtgtcatcttcaacgag
ctagttcggacgacacagaactatatcaagaacctgacccgtattgaccccttgtggctg
gctgagctcgccccgcagtactacgctaccgaagagtaa
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