Zea mays (maize): 100281521
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Entry
100281521 CDS
T01088
Name
(RefSeq) ATP-dependent RNA helicase DDX23
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
zma
Zea mays (maize)
Pathway
zma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100281521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zma03041
]
100281521
Enzymes [BR:
zma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100281521
Spliceosome [BR:
zma03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100281521
Complex C
U5 SnRNP specific factors
100281521
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DDX23
ResIII
NUP42_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
100281521
NCBI-ProteinID:
NP_001360895
UniProt:
C0HHR1
LinkDB
All DBs
Position
5:12130321..12134249
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AA seq
734 aa
AA seq
DB search
MKRSADAMTEPVKPVFLTKAERERLALERRQAAVSDQRRTALDLIQSLPRPPPPPTSGGP
PPSGSNPARRDSSNSNRDSDRDRDRDQDRERRRDDDSRRDRYRDRDRDRDRDRDDSSRRD
RDRDRRDRDRDRDRDRDRDRGDRERDRLEKIAEREREKELDAIKEQYLGSKKPKKRVIKP
SEKFRFSFDWENTEDTSRDMNALYQSPHEARLLFGRGFLAGIDRREQKKAAAVHEKETRA
ELRRKAGVEDRPEDDAVDKKKAAAAEIYDAFDMRVDRHWSEKTLEEMTERDWRIFREDFN
ISYKGSRIPRPMRKWSESKLGTELLRAIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETG
SGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGLKV
VSIVGGQSIEEQGFKIRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGF
EPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVT
IGTAGKATDLITQNVIMVKESEKMPRLQKILTDLGDKTAIVFCNTKKTADMRAKDLDKAG
FRVTTLHGGKSQDQREISLDGFRNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSIDTY
THRIGRTGRAGKKGVASSFLTYENTDIFFDLKQMLMQSNSPVPPELARHEASKFKPGSIP
DRPPRRNDTVFANH
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgctccgccgacgcgatgactgagccggtgaagcctgtgttcctcaccaaggcg
gagcgggagcgcctcgcgcttgagcgccgccaggccgccgtctccgaccagcgccgcacc
gcgctcgacctcatccagtccctgccccggccccctccgccgccgacttccggtggtcct
cccccgtccggctccaaccccgcacgtcgcgactcctccaactccaaccgcgactccgac
cgggacagggaccgggaccaagaccgggaacgccgccgcgacgacgactcccgccgcgac
cgatatcgggatcgagatcgagatagggaccgcgaccgagatgactcctcccgccgcgac
agggaccgcgaccggcgcgaccgtgatagggaccgggaccgggaccgcgacagggatcgc
ggggaccgggagagggaccggctggagaagattgcggagcgggagcgtgagaaggagctc
gacgcgatcaaggagcagtacctcgggtccaagaagcccaagaagcgggttatcaagccc
tctgagaagttccgcttctccttcgactgggaaaacaccgaggacaccagccgggacatg
aatgcactctaccagtcgccgcacgaggcccggctgctctttggccggggcttccttgcc
ggcattgaccgacgtgagcagaagaaggcggcagctgtgcacgagaaggagacccgtgca
gagctgcggcgcaaggctggtgtggaggaccgtccggaggatgatgcggtagataagaag
aaggctgctgctgctgaaatttatgatgctttcgatatgcgtgtggacaggcactggtcc
gaaaagacactcgaggagatgactgagcgggattggcgaattttccgtgaggatttcaat
atctcctataagggttctcgcataccccgaccgatgcgaaagtggagtgaaagcaagctt
ggcaccgagttgcttcgtgctattgacaaggctggatatgaaaaaccgtcaccaatccag
atggctgccattccgctaggtctacagcagcgtgatgttattggtattgctgagacaggt
tctggaaagactgcagcttttgtactccccatgttgtcttacattacccgattgccaccc
ataagcgaggagaatgaggccgagggtccctatgccgttgttatggcacctactcgtgag
cttgctcaacagattgaggaggagactgtgaaatttgcaacctatctaggccttaaagtt
gtctcaattgttggtggccagtcaattgaggagcagggtttcaagattaggcagggctgt
gagattgtaattgccacacctggtcggcttcttgattgcttggaaaggaggtatgctgtt
ctcaaccagtgcaactatgttgtgctcgatgaggctgataggatgattgatatgggcttt
gagccacaagttgttggtgtccttgacgcgatgccatcgagtaacttgaaacctgaaaat
gaggatgaggaacttgatgagaaaaggatttacagaactacttatatgttcagtgccacc
atgcctcctgctgtggaacgtcttgctaggaagtatctccgaaacccagttgttgtgaca
attggtacggctggcaaggccactgatctgatcacccagaatgtgatcatggtgaaggag
tctgagaagatgccacggctccagaagatactcacggatcttggagacaagactgccatt
gtgttctgcaatactaagaagacagcggacatgcgcgccaaggatctggacaaggcaggc
ttccgcgtcacaaccctacatggtgggaagtcacaagaccagagagagattagccttgat
ggatttagaaaccgtcggttcaatgttcttgtggctactgatgttgcaggacgtggtatt
gatattcctgatgttgcacacgtgattaactatgagatgcctagttcaatcgacacatac
acacatcgcattggaaggacaggtcgtgctggaaagaagggagtagcaagttcattttta
acttacgagaacactgatattttctttgatctgaaacagatgcttatgcagagcaacagt
cccgtaccacctgaacttgcaaggcatgaggcatcaaaatttaagccaggctcaattcct
gatagacctccaaggcgaaatgatacagtctttgcaaatcattga
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