Zea mays (maize): 100282531
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Entry
100282531 CDS
T01088
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
zma
Zea mays (maize)
Pathway
zma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100282531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zma03041
]
100282531
03009 Ribosome biogenesis [BR:
zma03009
]
100282531
Enzymes [BR:
zma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100282531
Spliceosome [BR:
zma03041
]
Complex A
U2 snRNP components
U2 related factors
100282531
Complex B
100282531
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
100282531
Ribosome biogenesis [BR:
zma03009
]
Eukaryotic type
90S particles
Helicases
100282531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
ABC_tran
ResIII
SRP54
nSTAND3
T2SSE
AAA_30
HTH_IclR
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
100282531
NCBI-ProteinID:
NP_001148911
UniProt:
B6T8I5
LinkDB
All DBs
Position
9:complement(140289468..140293833)
Genome browser
AA seq
722 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSGKLGRAASNGAAATAAGTNPSVNRWNGRPYTARYFEILE
KRRTLPVWQQKEEFLRRLRDNQTLILVGETGSGKTTQIPQFVLETEGLGNRSMVACTQPR
RVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLEKY
KVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSDAPLMKVPG
RLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEINN
MGDQVGPVKVVPLYSTLPPAMQQKIFEPAPAPLKERGPPGRKIVVSTNIAETSLTIDGIV
YVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNEDL
QPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDEGN
LTQLGEMMSEFPLDPQMSKMLVISPKYNCSNEILSISAMLSAPNCFLRPREAQKAADEAK
ARFGHIDGDHLTLLNVYHAYKQNNEDPQWCYENFINSRALKSADNVRQQLVRIMTRFNLK
MCSTDFNSREYYVNIRKTLLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEWV
IYNEYVLTTRNFIRTVTDIRGEWLIDIAPHYYDLSNFPSCEAKRVLERLYNKRERERAAN
RG
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagcggaagcggaaggtgagtcttttcgacgtggtcgacgagacctccgtc
tccggcaagctgggccgcgccgcctccaacggcgccgccgccactgcggcggggaccaat
ccgtctgtcaaccggtggaacggccggccctacacggcacggtacttcgagatcctcgag
aagcgccgcacactgcccgtgtggcagcagaaggaggagttcctccgccgcctccgcgac
aaccagaccctcatcctcgtcggcgaaacgggaagcggaaagacaactcagattccacaa
tttgttcttgagactgaaggcttgggtaaccgttccatggttgcctgcactcagcctcgg
agggtcgcggcaatgtcagtctccaggcgtgtggcagaggagatggatgttactattggg
gaagaagtgggttacagtattcggtttgaagattgcagcagccacaaaactgttctcaaa
tatttgacagatggtatgcttctgagagaagcaatggcagacccacttttagagaagtac
aaggtgattgttcttgatgaggctcatgagaggactttggcaacagatgttttgtttggg
cttctgaaggaggttctaaaaaatagaccggatttgaagcttgttgttatgagtgctact
ctcgaagcagagaaattccagggttactttagtgatgcaccgttgatgaaggtgcctggg
agacttcatccagttgagatattttacacccaagaaccagagagggactatctagaggct
gctatcaggacagttgtgcaaatacatatgtgtgaacctgctggtgatatccttgtattc
cttactggagaagaggagattgaggacgcatgtcggaaaatcaataaggaaatcaataat
atgggagatcaggttggcccagttaaagtcgtgcctttatactctacactgcccccagcc
atgcagcagaagatttttgaacctgctcctgccccattgaaggaacgaggtcctcctgga
aggaaaattgttgtgtccaccaacattgctgaaacatccttaactatagatggcatagtt
tatgtgatagacccggggttttctaaacagaaagtttacaacccaagaataagggtggaa
tccctcctggtgtcaccaatttctaaggcaagtgctcatcagagagctggtcgtgctgga
cgaacgcaacctgggaagtgctttaggctatacacagagaagagctttaatgaggatttg
caaccacagacatacccagaaattcttcggtcgaacctggcaaatacagttcttaccttg
aagaaacttggaattgatgatttagtgcattttgactttatggatcctccagcaccagaa
actctaatgagggccttagaagttttgaactatttggctgcactagatgatgaaggtaat
ctaacacagttaggtgagatgatgagtgagtttcccctggatccacaaatgtcaaagatg
cttgtcatcagtccaaagtacaactgttcgaatgagatcttatcaatatctgccatgctg
tcagcacccaattgcttcctccggcctagggaagctcaaaaggctgctgatgaggccaag
gctcgatttggccatattgatggggaccatctgacgcttctgaatgtataccatgcatac
aagcaaaacaatgaagatccccagtggtgttatgagaactttatcaattccagagcactc
aagtctgcagacaatgtcagacaacagcttgttcgcatcatgactagattcaacctcaag
atgtgcagcacggatttcaatagccgtgagtactacgtcaatatcaggaaaaccctgctt
gcagggtatttcatgcaggtcgctcacctggaacgaactggacattacctgactgtaaaa
gataaccaggtcgtccatcttcatccctccaattgcatggaccataagccagagtgggtc
atctacaatgaatacgtcttgactaccaggaatttcatccgcacagtcaccgatatccgt
ggggaatggctaattgatattgcgccgcattactatgacctgagcaatttcccgtcatgt
gaggccaagcgtgttcttgagaggctgtataacaagcgggagagggaaagagctgcaaat
agaggctga
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