Zea mays (maize): 100284798
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Entry
100284798 CDS
T01088
Name
(RefSeq) pre-mRNA cleavage complex II protein Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
zma
Zea mays (maize)
Pathway
zma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100284798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
100284798
Enzymes [BR:
zma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
100284798
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100284798
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
ATP_bind_1
AAA_22
CbiA
SRPRB
ABC_tran
AAA_10
AAA_24
MMR_HSR1
AAA_29
GTP_EFTU
Motif
Other DBs
NCBI-GeneID:
100284798
NCBI-ProteinID:
NP_001151165
UniProt:
K7UQV5
B8A358
B8A3A7
LinkDB
All DBs
Position
4:complement(239015246..239019944)
Genome browser
AA seq
439 aa
AA seq
DB search
MAAATTAGAGAATPQPPRQYKLAPQSELRVEVLPDAPLRVRLVTGTAEIFGTELPPEGWV
PVPPRSKIAIFTWHGATVELDGVSESEYTSDETPMVIYVNTHAILDARRARARTAAAQGG
DKEASQGPRVIVVGPTDSGKSTLCKMLLSWAAKLGWKPTYVDLDIGQGSITIPGCISATP
IEKPIDIIDGIPLEMPLVYFYGHPNPSINADVYKVLMKELAKTLEKQFSGNAESRAAGMV
INTMGWVEGLGYELLLNAIETFKANVVLVLGQEKLWKMLKDAVQSKSNIDVVKLHKSEGV
VLRNSKYRQRTRSFRIKEYFYGIANDLAPHSNIVNFSDVSVYKIGGGHQAPRSALPIGAE
PVADPTRLVAVNISTDMIHTVLAISYAKEPEEIISSNVAGFIHVTDVDIQRKKLTYIAPC
PGDLPSRLLIASSLTWYEA
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgcgacaaccgcgggggccggagccgcgacgccgcagccgccacggcagtac
aagctagctccgcagagcgagctgcgtgtggaggtgctccccgacgcgcccctccgagtg
cgcctcgtcactggcaccgcagagatcttcggcaccgagctgcctccggagggctgggtc
cccgtccctccccgatccaagatcgccattttcacctggcacggcgcgacggtggaactg
gacggggtgagcgagagcgagtacacgtctgacgagactccaatggtaatttatgtcaac
acgcacgccattctggatgcccgcagggcaagggcgagaacagccgcagctcaggggggc
gataaggaggcatcacagggacctagagtgattgttgtggggccaacagattctggaaaa
agtactctctgcaaaatgcttcttagctgggctgccaaactgggctggaagcctacgtat
gtcgatttagatattggccagggatctataacgatccctggatgtatttctgctacacca
attgagaaacctatagatataattgatgggattcccttggagatgccactggtatacttc
tatggtcacccaaatccaagtattaatgcggatgtttacaaagttcttatgaaggagcta
gctaaaacattggagaaacagttctctggcaatgctgaatctagggcagcaggaatggtt
atcaatacaatggggtgggttgaaggccttgggtatgagttacttctcaacgcaattgaa
accttcaaggccaatgtagtactggtactgggacaggagaaactctggaagatgttgaaa
gatgcagttcaaagcaagtccaacattgatgttgtaaaacttcataaatcagagggtgtt
gtcctcagaaattcaaaatatcggcaaagaacgagaagcttccgaatcaaggaatacttt
tatgggattgcaaatgatcttgcaccgcactcaaacattgtcaatttcagtgatgtctcg
gtgtataaaatcggtggtggccatcaagctccccgttcagcattacctatcggtgcagag
cctgtggcagatcctactcgacttgttgctgtcaacatcagcacggatatgatccataca
gtgcttgcaatttcctatgctaaggaacctgaagaaataatatctagcaatgttgccgga
ttcattcatgttactgatgttgacatccaaaggaagaagctgacgtacattgcaccttgc
ccgggggacttgccaagcaggttgttgatcgcgagttcacttacatggtatgaagcgtga
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