Zea mays (maize): 100285156
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Entry
100285156 CDS
T01088
Name
(RefSeq) cleavage and polyadenylation specificity factor, 73 kDa subunit
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
zma
Zea mays (maize)
Pathway
zma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100285156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zma03021
]
100285156
03019 Messenger RNA biogenesis [BR:
zma03019
]
100285156
Transcription machinery [BR:
zma03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100285156
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100285156
U7-dependent histone pre-mRNA processing factors
100285156
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Abhydrolase_7
Motif
Other DBs
NCBI-GeneID:
100285156
NCBI-ProteinID:
NP_001151522
UniProt:
B6U1D4
A0A8J8XLE7
LinkDB
All DBs
Position
5:1225551..1228602
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AA seq
694 aa
AA seq
DB search
MAASAAAPSGAPPAGKRPASSGREGDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIH
PAYTGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYK
LLLSDYVKVSKVSVEDMLFDESDIARSMEKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAM
FMVDIAGVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQQHQPRIVREKRFTE
VIHNTVSQGGRVLIPAFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMAVYQT
YINSMNERIRNQFAQSNPFHFKHIESLNSIDNFHDVGPSVVMASPSGLQSGLSRQLFDKW
CTDKRNACVIPGYVVEGTLAKTIINEPREVALANGLTAPLHMSVHYISFSAHADFPQTSN
FLDELRPPNIILVHGEANEMSRLKQKLITQFDGTNTKIVSPKNCQSVEMYFTCEKMAKTI
GRLAEKVPEAGESSGGLLVKKGFTYQIMAPEDLRVFTQLSTANIMQRIAVPYCGSFEVIR
YRLEQIYESVEPAAEESDVPALIVHGRVTVRLDSESYVTLQWLSDPISDMVSDSVVAMIL
NVGREGPKVVPVEGAVKTKEETAQKVVYALMASLFGDVKVVEEGRLVISVDGNVAHLDGR
SGYVECENATLKERIKTAFRRIQGAVRPIPLASS
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctccgccgcggcgccgagcggcgcgccaccggctgggaagcgcccggcctcc
agcggacgggagggagaccagatggtcatcacgccgctgggcgccggcagcgaagtcggc
cgttcgtgcgtccacatgaccttcaaggggcgtactgtcctcttcgactgcggcatccac
ccggcgtacaccggcatggcggcgctgccctacttcgacgagatcgatccgtccgccata
gacgtcctcctcatcacccactttcacttggaccacgccgcatcgctgccgtacttcctg
gagaagactacgtttaagggccgtgtgtttatgactcacgccacaaaggctatttacaag
ctgctgctctcggattatgtcaaagtcagcaaggtgtccgtggaggatatgctgtttgat
gagagtgatattgctcgatccatggagaaaatcgaggttatagatttccaccagacgttg
gaagttaatgggatacgcttctggtgctacactgctggccatgtacttggtgccgctatg
ttcatggtggatattgctggcgtgcgcattctttacactggtgactactcccgtgaagaa
gaccgtcacctacgagctgctgagctcccacagttctccccagacatttgcattatcgag
tccacttacggcgtacagcaacatcagccccggattgtacgtgagaagcgctttactgag
gtcattcacaataccgtttcacaggggggccgtgttcttatcccggcatttgctctgggc
agagcacaagaactgttacttatcctcgatgagtattggtccaaacacccagagctccat
aagattcctatctattatgcgtcccctcttgccaagaggtgcatggctgtctaccagaca
tacataaactccatgaatgaaaggataaggaaccagtttgcgcaatccaacccgttccat
ttcaagcacatcgagtccttgaatagcatcgataacttccacgatgtgggtccatcagtg
gtgatggctagtccaagtggcctccagagtggtctctccaggcagctttttgataagtgg
tgcacagataagaggaatgcatgtgttattccaggttacgttgtggaggggacccttgcg
aagaccattatcaacgagccaagagaagtggcgctagctaatggcctcactgctcctctt
catatgtcggtccactatatctcgttttcagctcatgctgatttccctcagacaagcaac
tttctggacgaacttcggcctccaaatattattctcgtgcatggagaagcgaatgaaatg
tcgaggcttaagcagaaacttattactcagttcgatggcacaaatacgaaaatcgtgtct
cccaagaactgccagtcagtggagatgtatttcacctgtgagaaaatggccaagactatc
ggcaggctggcagaaaaggtaccagaagctggagagtcttccggtggcctactcgtgaag
aagggattcacataccagatcatggctcctgaagatctccgtgtgttcacgcagttatct
acagctaacatcatgcagcgcatcgcggtaccttactgtggttcctttgaagtcataagg
tacagactggagcagatatacgagagcgtggagccagcggcggaagaatccgatgttcca
gcgctgatcgtgcacggaagagtgacggttcgcctggactcagaaagctatgtcacgctg
cagtggctgtccgaccccatcagcgatatggtgtctgattctgtggtggctatgatcttg
aacgtcggtcgtgaaggtcccaaagttgttccggtggaaggagcagtgaagaccaaagag
gagacggctcaaaaggtggtgtatgctcttatggcttcacttttcggtgatgttaaagtt
gtggaggaagggagacttgtcatatctgtggatggaaatgtggcacacttggacgggagg
agtggctatgtggaatgtgagaatgctacactgaaggaacggatcaagactgcgttccgc
cgcatacagggtgccgtgagaccaatcccacttgcctcctcttga
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