KEGG   Zea mays (maize): 100285923
Entry
100285923         CDS       T01088                                 
Name
(RefSeq) set1 complex component swd2
  KO
K14962  COMPASS component SWD2
Organism
zma  Zea mays (maize)
Pathway
zma03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:zma00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100285923
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zma03019]
    100285923
   03036 Chromosome and associated proteins [BR:zma03036]
    100285923
Messenger RNA biogenesis [BR:zma03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     100285923
Chromosome and associated proteins [BR:zma03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     100285923
    COMPASS/SET1 complex (yeast)
     100285923
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 EIF3I ANAPC4_WD40 WDR55 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_SPT8 Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_RIG_2nd eIF2A PQQ_3 Beta-prop_Nup120_160 WD40_RFWD3 Beta-prop_DCAF12 WD_LRWD1 Beta-prop_NWD2_C Beta-prop_IFT122_2nd
Other DBs
NCBI-GeneID: 100285923
NCBI-ProteinID: NP_001152284
UniProt: C0PER6 B6UBR0
LinkDB
Position
6:173530413..173533524
AA seq 318 aa
MAAALSQLDDEIVRGMAIGAVFTDYAGKINCLDFHRKEDLLVTSSEDDSIRMYNITSATL
LKTTYHRKHGADRVCFSHHPSSILCSSRYNLESAESLRYLSLYDNRCLRYFKGHKDRVVS
LCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPSVAYDQQGLVFAVAMEGGAIK
LFDSRSYDKGPFDTFLVGGDTAEVSDIKFSNDGKSMLLTTTNNHIYVLDAYGGDKRCGFS
LEPSPNVTNEAAFTPDGQYVISGSGDGTLHAWNINTVQEIACWNSHIGPITALKWAPRRA
MFATASTALTFWIPNQSN
NT seq 957 nt   +upstreamnt  +downstreamnt
atggcggcggcgttgtcgcagctggacgacgagatcgtccgcggcatggccatcggcgct
gtcttcaccgactatgccgggaagataaactgcctcgacttccaccgcaaggaagatctc
ctcgtcacttccagcgaggacgactccatccgcatgtacaacatcaccagcgcgacgttg
ttaaagactacatatcacaggaaacatggtgctgaccgtgtctgttttagtcatcatcca
agttctatcttatgctcttcacgatacaacctagagtctgcagaatcacttcgttatctg
tcattgtatgacaaccgttgcttaagatacttcaaaggacacaaagacagggtcgtttca
ttatgtatgtcgcctgtcaatgatagctttatgtcaggatcacttgatcacagtgtcaga
atatgggatcttcgcgtaaatgcttgtcagggcatactaaggctgcgtggtagaccttct
gtcgcatatgatcagcagggacttgtttttgctgtagcaatggaaggaggtgctattaag
ttatttgattcccggtcatatgacaagggtccatttgacactttcttggttggtggagat
acagctgaagtttctgacatcaaatttagcaacgatggcaagtctatgcttttgacaaca
actaacaaccatatatatgttctggatgcatatggaggggataagaggtgtggctttagt
ttagagccatctcccaatgtaacaaatgaagctgctttcactccagatggtcaatatgta
atttcaggatcaggtgatggaaccctgcacgcttggaacatcaatacagtacaagagatt
gcttgttggaacagtcacattggtccgattacagcattgaagtgggcccctcgtcgagcg
atgtttgcaactgcatcaactgccctaactttctggattcccaaccaatcgaattag

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