Zea mays (maize): 100383288
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Entry
100383288 CDS
T01088
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
zma
Zea mays (maize)
Pathway
zma03013
Nucleocytoplasmic transport
zma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100383288
03015 mRNA surveillance pathway
100383288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
100383288
Enzymes [BR:
zma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100383288
5.6.2.5 RNA 5'-3' helicase
100383288
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100383288
mRNA cycle factors
Common to processing body (P body) and stress granule
100383288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
UvrD-helicase
nSTAND3
NPHP3_N
Helicase_RecD
ATPase
SRP54
PhoH
AAA_16
AAA_32
AAA_22
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
100383288
NCBI-ProteinID:
XP_008668399
UniProt:
A0A1D6EWB9
LinkDB
All DBs
Position
2:208242741..208268700
Genome browser
AA seq
1274 aa
AA seq
DB search
MATQPPSTATAAVDLYETASQPDAPAAGDAYTFLEFNTQGDDFDYPDFPELSQPPPRSTP
LTSSIPGAGTSSSSWPAPPPPPSDAASPEPDLTSQDVHTPPASSSSPSPRSASKARPSAA
ADGLASGVVALNFEDPVGTGAVEDGYDYSKGDFVEHACRYCGIHNPACVARCNVPSCRKW
FCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKAEN
VVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLSWLVKVPSEQEQLRARQISAQQIN
KVEELWKTNPDASLEDLEKPGVDDEPQPVVLKYEDAYQYQNVFAPLIKLEADYDKMMKES
QSKDNVTVRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYPGDSSHPTWQSVGHVIK
LTAQEEVALELRASQGVPTELNVGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHH
LLGHEVEHQIIRNTLPRRFGAPGLPELNASQVLAVKSVLQKPVSLIQGPPGTGKTVTSAA
IVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQ
VRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREILQSADVICCTCVGAGD
PRLSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQ
SLFERLVILGVKPFRLQVQYRMHPCLSEFPSNCFYEGTLQNGVTVNERQSSGIDFPWPVP
NRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAY
IVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVA
LTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYND
RRLFLGGGQGVMHGTNFGAGASSQAADKRSGRGKEGQSFAPYGPPNGVHKPGVHPVGYAV
PRMPFPPFPGAPHSQPYAIPTRGLHGPLGAVPPVHQPGSRNFGSARSNTGGPIGGHLAHQ
QNSQQAMGSIGSNFNYTGMENPSSQPSGGAQMSQTGLMTQVPVQGLSQTFRDGFSIGGMS
QDFFVDDFKSQGSHVPYNIAEFSTQASQGGYGVEFTQAPQSGYSGNYMNQNSHPGYSHIG
TTNDIVSQDHMAHGSHGMFTQAGYNDPSQDESSQIHYGMAAAGPLQSQGMMNPLYSQSYA
HYNTQPQSLQPPPQ
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcagccgccctctaccgccactgccgcggttgacctctatgagacggcctcg
cagccggacgcccccgccgccggcgacgcctacacttttctcgagttcaacacgcagggg
gacgacttcgactaccccgacttcccggagctctctcaaccacctccccgatccacgccg
ctgacgtcctccatccccggcgccggcacgtcgtcctcgtcgtggcctgccccaccgcct
ccgccgtccgacgcggcctccccggaacccgatctcacgtctcaagacgtccacaccccg
ccggcctcctcctcctcgccgtcgccgcgttccgcctccaaggcgcgtccgtcggctgcg
gcggatgggctcgcctccggggttgtcgcacttaacttcgaggatcctgtaggaaccggc
gccgtggaggacgggtacgactacagcaagggagacttcgtggaacacgcatgccggtac
tgcgggatccacaaccctgcgtgcgtggcgaggtgcaacgtaccctcctgccgcaagtgg
ttctgtaactcgcgggggaacacttcaggctcccacattgtcaaccacctggttagggca
aagcataaggaagtatgccttcacaaggatagccctttaggagaaacaattctcgaatgc
tacaactgtggttgtcggaatgtatttcttcttgggtttatctcagcaaaggcggagaat
gttgtcgttcttttatgcagagaaccatgtttaagtgttaatgcactgaaggatatgaat
tgggatctcagtcagtggtgccctcttatcgacgacaggtgttttttgtcgtggcttgta
aaggtaccttcagagcaggagcagctaagagctcgccaaattagtgctcaacaaatcaac
aaagtggaagagctctggaagacaaatcctgatgcatctcttgaagatcttgaaaagccc
ggtgtagatgatgaacctcagccagttgttttgaagtatgaagatgcttaccagtaccaa
aatgtttttgcaccactgataaagcttgaggctgattatgacaagatgatgaaagagtca
cagagcaaggataatgtaactgtccggtgggatattgggttgaacaagaagcgtgtagct
tactttgtctttccaaaggaagacaatgagttgaggcttgtgcctggagatgaactacgc
ctgagatatcctggtgatagctcacatcccacatggcaatctgtcggacatgtgattaag
ctcactgcacaagaggaggtggcacttgagcttcgcgctagtcagggggtgcctactgag
ctaaatgttggattcagtgtggattttgtttggaagagtaccagttttgataggatgcaa
ggagcgatgaaaacttttgctgtggacgagacaagtgtcagtggatacatataccatcac
cttttgggacatgaagttgagcatcaaataatacgtaataccctaccaagacgctttggt
gcacctggacttccagaactaaatgcttcccaggttttagcagttaaaagtgtcctgcag
aagccagttagtttgattcaaggtccacctggcactggaaaaactgtcacatctgctgca
attgtgtatcacatggcaaaacaaggtcaaggacaggttcttgtatgtgccccaagtaat
gttgctgttgatcagctggcagagaagataagctcaactggtctgaaggttgttagactg
tgtgcaaaatctagagaagctgtttcgtctcctgttgagcatctcacacttcattatcag
gttaggcaccttgatacttctgagaagagtgaattgcacaagctacaacaactgaaagat
gaacaaggtgaattgtccagcagtgatgagaagaaatacaaggcactaaagcgtgccact
gaaagagagatactgcagagtgccgatgtcatttgttgcacctgtgttggtgctggagat
cctcgtctttcaaacttccgtttccgacaagttcttattgatgagtccacacaggctaca
gagccggaatgtcttattcctttagtgcttggtgtcaagcaggttgtccttgtcggtgat
cattgtcaactgggtccagtcatcatgtgcaaaaaagcagcccgtgcagggttagcacaa
tctctctttgaacgccttgttatccttggagtgaagccattcaggctacaggtccagtat
agaatgcatccttgcctctcggagttcccatccaactgcttctatgaaggcacactgcaa
aatggagtgactgttaatgagaggcaatcgtctggaattgattttccttggcctgttcca
aatcggcctatgttcttctatgtgcagatgggacaagaagagatcagtgctagtgggaca
tcctatctcaatagaactgaagctgcaaatgttgaaaaaattgtaacaacatttttaaga
agtggtgttgtaccaagccagattggagttatcacaccttatgaaggacagagggcttac
atcgtaaattacatggcaaggaatggctctcttcgccaacaactttacaaagaaatcgag
gttgctagtgtagactcatttcagggtagagagaaagactacattattctatcttgtgtt
agaagcaatgagcaccagggaatcgggtttctcaatgatccgcgcaggttaaatgttgcg
ctaactcgtgcacgttatggcatagttattcttggtaatccaaaagtactaagcaagcag
ccactttggaatagcttgttgacacattacaaggagcatgagtgcttggtagaaggacct
ctgaacaacttaaagcagagtatggtgcaatttcagaagccaaaaaagatatataatgac
cggagattgttcctgggcggtggtcaaggtgttatgcatggaactaactttggggctggg
gcctcaagccaagcagcagataagagaagtggcagagggaaagaaggacaatcgtttgct
ccttatggccctccaaatggggtgcataagcctggtgtgcacccggttggctatgctgta
ccacgtatgccttttcctccatttcctggggctccacattctcaaccatacgcaattcca
acccggggtttgcatgggccccttggagctgttccaccggtgcatcaacctggaagtaga
aactttgggtcagctcgttcaaatactggtgggcctattggtggccaccttgctcatcaa
cagaactcccagcaagctatggggagcattgggtcaaattttaactacactggaatggag
aatccaagtagtcagccttctggtggagcacaaatgtcccaaactggattaatgacccag
gtgcctgtccaaggactaagtcaaacattccgtgatggtttttctattggtgggatgtca
caggacttctttgtagacgattttaagagccaagggtcacatgtgccatacaatattgct
gaattttctacccaggcttctcaaggtggttatggtgttgagtttactcaagcgccccaa
tctggatactctgggaattatatgaaccaaaattcacatcctggatactcccatattggt
acaacaaatgacattgtatctcaggatcacatggcccatggatctcatgggatgtttaca
caagcgggatataatgatccctcacaagatgagtcgtctcagattcattatggaatggct
gccgctggccctctacagtcgcagggcatgatgaaccccttgtactctcaatcctatgct
cactacaacacccaaccacagtctcttcaacctccgccccagtga
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